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Genome Organization and Copy-Number Variation Reveal Clues to Virulence Evolution in Coccidioides posadasii 期刊论文
发表期刊: JOURNAL OF FUNGI. 出版年: 2022, 卷号: 8, 期号: 12
作者:  Dubin, Claire A. A.;  Voorhies, Mark;  Sil, Anita;  Teixeira, Marcus M. M.;  Barker, Bridget M. M.;  Brem, Rachel B. B.
收藏  |  浏览/下载：17/0  |  提交时间：2024/09/20
Coccidioides  virulence  fungal pathogens  copy number variation  genome organization  
Eight Million Years of Satellite DNA Evolution in Grasshoppers of the Genus Schistocerca Illuminate the Ins and Outs of the Library Hypothesis 期刊论文
发表期刊: GENOME BIOLOGY AND EVOLUTION. 出版年: 2020, 卷号: 12, 期号: 3, 页码: 88-102
作者:  Palacios-Gimenez, Octavio M.;  Milani, Diogo;  Song, Hojun;  Mart, Dardo A.;  Lopez-Leon, Maria D.;  Ruiz-Ruano, Francisco J.;  Camacho, Juan Pedro M.;  Cabral-de-Mello, Diogo C.
收藏  |  浏览/下载：27/0  |  提交时间：2020/07/01
chromosomal evolution  genome organization  tandem repeats  repetitive DNA  
Physical mapping of ribosomal DNA and genome size in diploid and polyploid North African Calligonum species (Polygonaceae) 期刊论文
发表期刊: PLANT SYSTEMATICS AND EVOLUTION. 出版年: 2015, 卷号: 301, 期号: 6, 页码: 1569-1579
作者:  Gouja, Hassen;  Garnatje, Teresa;  Hidalgo, Oriane;  Neffati, Mohamed;  Raies, Aly;  Garcia, Sonia
收藏  |  浏览/下载：12/0  |  提交时间：2019/11/29
5S rDNA  35S rDNA  Cytogenetics  FISH  Fluorochrome banding  Genome organization  
Complete mitochondrial genome of the desert toad-headed agama, Phrynocephalus przewalskii (Reptilia, Squamata, Agamidae), a novel gene organization in vertebrate mtDNA 期刊论文
发表期刊: MITOCHONDRIAL DNA. 出版年: 2015, 卷号: 26, 期号: 5, 页码: 696-697
作者:  Li, Donghai;  Song, Sen;  Chen, Tao;  Zhang, Caihong;  Chang, Cheng
收藏  |  浏览/下载：11/0  |  提交时间：2019/11/29
Genome organization  mitogenome  Phrynocephalus przewalskii  
The clustering of CpG islands may constitute an important determinant of the 3D organization of interphase chromosomes 期刊论文
发表期刊: EPIGENETICS. 出版年: 2014, 卷号: 9, 期号: 7, 页码: 951-963
作者:  Gushchanskaya, Ekaterina S.;  Artemov, Artem V.;  Ulyanov, Sergey V.;  Logacheva, Maria D.;  Penin, Aleksey A.;  Kotova, Elena S.;  Akopov, Sergey B.;  Nikolaev, Lev G.;  Iarovaia, Olga V.;  Sverdlov, Eugene D.;  Gavrilov, Alexey A.;  Razin, Sergey V.
收藏  |  浏览/下载：31/0  |  提交时间：2019/11/29
CpG island  housekeeping gene  CTCF  genome spatial organization  4C  
OASIS/CREB3L1 is epigenetically silenced in human bladder cancer facilitating tumor cell spreading and migration in vitro 期刊论文
发表期刊: EPIGENETICS. 出版年: 2014, 卷号: 9, 期号: 12, 页码: 1626-1640
作者:  Rose, Michael;  Schubert, Claudia;  Dierichs, Laura;  Gaisa, Nadine T.;  Heer, Matthias;  Heidenreich, Axel;  Knuechel, Ruth;  Dahl, Edgar
收藏  |  浏览/下载：17/0  |  提交时间：2019/11/29
bladder cancer  HTRA3  OASIS  CREB3L1  promoter methylation  tumor cell migration  tumor suppressor gene  ATCC  American Type Culture Collection  BMP-2  bone morphogenetic protein 2  CA  California  cDNA  copy number desoxyribonucleic acid  CIS  Carcinoma in situ  CREB3L1  element binding protein 3-like 1  DAB  3-3 diaminobenzidine  DAC  5-aza-2-deoxycytidine  DNA  desoxyribonucleic acid  EK  ethics committee  ER  endoplasmic reticulum  FC  fold change  FFPE  formalin fixed paraffin embedded  G1  well differentiated  G2  moderately differentiated  G3  poorly differentiated  GAPDH  glyceraldehyde 3-phosphate dehydrogenase  HCV  Hepatitis C virus  HPV  human papilloma virus  HTRA (1-4)  high-temperature requirement factor A (1-4)  IQR  interquartile range  IRS  immunoreactive score  LMU  Ludwig-Maximilians-University  M  methylated  MIBC  muscle invasive bladder cancer  mRNA  messenger ribo nucleic acid  MSP  methylation specific PCR  n  number  NMIBC  non-muscle invasive bladder cancer  ns  not significant  NU  normal urothelium  OASIS  old astrocyte specifically-induced substance  PCR  polymerase chain reaction  pTa  papillary non-invasive tumors  RIP  regulated intramembrane proteolysis  RWTH  Rheinisch Westfalisch Technische Hochschule  s  e  m  standard error of the margin  SP1  site 1 protease  SP2  site 2 protease  TCGA  The Cancer Genome Atlas  TGF-  transforming growth factor beta  TSA  trichostatin A  TSS  transcription start site  U  unmethylated  UC  urothelial cell cancer  UPR  unfold protein response  USA  United States of America  WHO  World Health Organization  WI  Wisconsin  
Large replication skew domains delimit GC-poor gene deserts in human 期刊论文
发表期刊: COMPUTATIONAL BIOLOGY AND CHEMISTRY. 出版年: 2014, 卷号: 53, 页码: 153-165
作者:  Zaghloul, Lamia;  Drillon, Guenola;  Boulos, Rasha E.;  Argoul, Francoise;  Thermes, Claude;  Arneodo, Alain;  Audit, Benjamin
收藏  |  浏览/下载：11/0  |  提交时间：2019/11/29
Nucleotide composition strand asymmetry  Skew-N domains  Skew-split-N domains  Master replication origins  Gene organization  Human genome  
Landscapes and archipelagos: spatial organization of gene regulation in vertebrates 期刊论文
发表期刊: TRENDS IN CELL BIOLOGY. 出版年: 2012, 卷号: 22, 期号: 7, 页码: 347-354
作者:  Montavon, Thomas;  Duboule, Denis
收藏  |  浏览/下载：9/0  |  提交时间：2019/11/29
transcription  genome organization  chromatin loops  enhancers  long-range regulation