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A reference transcriptome for walnut anthracnose pathogen, Ophiognomonia leptostyla, guides the discovery of candidate virulence genes 期刊论文
发表期刊: FUNGAL GENETICS AND BIOLOGY. 出版年: 2023, 卷号: 169
作者:  Khelghatibana, Fatemeh;  Javan-Nikkhah, Mohammad;  Safaie, Naser;  Sobhani, Ahmad;  Shams, Somayeh;  Sari, Ehsan
收藏  |  浏览/下载：28/0  |  提交时间：2024/09/29
Ophiognomonia leptostyla  RNA-seq  De novo transcriptome assembly  K-means clustering  Candidate effector  CAZy  Juglans regia (cv. Chandler)  
Normalized Workflow to Optimize Hybrid De Novo Transcriptome Assembly for Non-Model Species: A Case Study in Lilium ledebourii (Baker) Boiss 期刊论文
发表期刊: PLANTS-BASEL. 出版年: 2022, 卷号: 11, 期号: 18
作者:  Sheikh-Assadi, Morteza;  Naderi, Roohangiz;  Salami, Seyed Alireza;  Kafi, Mohsen;  Fatahi, Reza;  Shariati, Vahid;  Martinelli, Federico;  Cicatelli, Angela;  Triassi, Maria;  Guarino, Francesco;  Improta, Giovanni;  Claros, Manuel Gonzalo
收藏  |  浏览/下载：23/0  |  提交时间：2024/09/20
transcriptomics  de novo assembly  hybrid transcriptome  normalized comparison  optimization  non-model organisms  
De novo assembly and comparative transcriptome analysis of contrasting pearl millet (Pennisetum glaucum L.) genotypes under terminal drought stress using illumina sequencing 期刊论文
发表期刊: NUCLEUS-INDIA. 出版年: 2020, 卷号: 63, 期号: 3, 页码: 341-352
作者:  Shivhare, Radha;  Lakhwani, Deepika;  Asif, Mehar H.;  Chauhan, Puneet S.;  Lata, Charu
收藏  |  浏览/下载：18/0  |  提交时间：2021/01/08
Comparative transcriptome  De novo assembly  Pearl millet  Terminal drought  
Development of a relevant strategy using de novo transcriptome assembly method for transcriptome comparisons between Muscovy and common duck species and their reciprocal inter-specific mule and hinny hybrids fed ad libitum and overfed 期刊论文
发表期刊: BMC GENOMICS. 出版年: 2020, 卷号: 21, 期号: 1
作者:  Liu, Xi;  Herault, Frederic;  Diot, Christian;  Corre, Erwan
收藏  |  浏览/下载：17/0  |  提交时间：2021/01/07
RNA sequencing  Interspecific hybrids  De novo transcriptome assembly  Gene expression  Liver steatosis  
De novo transcriptomic analysis of cowpea (Vigna unguiculata L. Walp.) for genic SSR marker development 期刊论文
发表期刊: BMC GENETICS. 出版年: 2017, 卷号: 18
作者:  Chen, Honglin;  Wang, Lixia;  Liu, Xiaoyan;  Hu, Liangliang;  Wang, Suhua;  Cheng, Xuzhen
收藏  |  浏览/下载：23/0  |  提交时间：2019/11/29
Vigna unguiculata (L.) Walp  Transcriptome  De novo assembly  Functional annotation  Genic SSR  
RADseq dataset with 90% missing data fully resolves recent radiation of Petalidium (Acanthaceae) in the ultra-arid deserts of Namibia 期刊论文
发表期刊: ECOLOGY AND EVOLUTION. 出版年: 2017, 卷号: 7, 期号: 19, 页码: 7920-7936
作者:  Tripp, Erin A.;  Tsai, Yi-Hsin Erica;  Zhuang, Yongbin;  Dexter, Kyle G.
收藏  |  浏览/下载：15/0  |  提交时间：2019/11/29
de novo assembly  desert  RADseq  reference-based assembly  speciation  stacks  
Comparative transcriptome analyses of a mangrove tree Sonneratia caseolaris and its non-mangrove relatives, Trapa bispinosa and Duabanga grandiflora 期刊论文
发表期刊: MARINE GENOMICS. 出版年: 2017, 卷号: 31, 页码: 13-15
作者:  Li, Jianfang;  Yang, Yuchen;  Yang, Shuhuan;  Zhang, Zhang;  Chen, Sufang;  Zhong, Cairong;  Zhou, Renchao;  Shi, Suhua
收藏  |  浏览/下载：19/0  |  提交时间：2019/11/29
Mangroves  Comparative transcriptome  De novo assembly  Annotation  Positive selection  
Compacting and correcting Trinity and Oases RNA - Seq de novo assemblies 期刊论文
发表期刊: PEERJ. 出版年: 2017, 卷号: 5
作者:  Cabau, Cedric;  Escudie, Frederic;  Djari, Anis;  Guiguen, Yann;  Bobe, Julien;  Klopp, Christophe
收藏  |  浏览/下载：7/0  |  提交时间：2019/11/29
RNA-Seq  De novo assembly  Compaction  Correction  Quality assessment  
Transcriptome sequencing reveals high isoform diversity in the ant Formica exsecta 期刊论文
发表期刊: PEERJ. 出版年: 2017, 卷号: 5
作者:  Dhaygude, Kishor;  Trontti, Kalevi;  Paviala, Jenni;  Morandin, Claire;  Wheat, Christopher;  Sundstrom, Liselotte;  Helantera, Heikki
收藏  |  浏览/下载：14/0  |  提交时间：2019/11/29
Pool-seq  RNA-sequencing  Ants  Transcriptome de novo assembly  Hymenoptera  Transcriptomics  
Tools for building de novo transcriptome assembly 期刊论文
发表期刊: CURRENT PLANT BIOLOGY. 出版年: 2017, 卷号: 2021-11-12, 页码: 41-45
作者:  Geniza, Matthew;  Jaiswal, Pankaj
收藏  |  浏览/下载：14/0  |  提交时间：2021/01/08
Transcriptiome  De novo assembly  Gene expression  RNA-Seq  Differential gene expression  Plant gene expression  Plant Ontology  Gene Ontology  De novo transcriptome assembly  Genome annotation  Genetic marker identification  Plant Reactome  Velvet Oases  SPAdes  Trinity  BinPacker  RNA QUAST  TransRate  CD-HIT-ES