干旱区生态环境知识资源中心(Arid): De novo Phased Genome Assembly, Annotation and Population Genotyping of Alectoris Chukar

Arid

DOI	10.1038/s41597-024-02991-0
	De novo Phased Genome Assembly, Annotation and Population Genotyping of Alectoris Chukar
	Zhou, Hao; Huang, Xunhe; Liu, Jiajia; Ding, Jinmei; Xu, Ke; Zhu, Wenqi; He, Chuan; Yang, Lingyu; Zhu, Jianshen; Han, Chengxiao; Qin, Chao; Luo, Huaixi; Chen, Kangchun; Jiang, Shengyao; Shi, Yurou; Zeng, Jinyuan; Weng, Zhuoxian; Xu, Yongjie; Wang, Qing; Zhong, Ming; Du, Bingwang; Song, Sen; Meng, He
通讯作者	Meng, H
来源期刊	SCIENTIFIC DATA
EISSN	2052-4463
出版年	2024
卷号	11 期号:1
英文摘要	The Alectoris Chukar (chukar) is the most geographically widespread partridge species in the world, demonstrating exceptional adaptability to diverse ecological environments. However, the scarcity of genetic resources for chukar has hindered research into its adaptive evolution and molecular breeding. In this study, we have sequenced and assembled a high-quality, phased chukar genome that consists of 31 pairs of relatively complete diploid chromosomes. Our BUSCO analysis reported a high completeness score of 96.8% and 96.5%, with respect to universal single-copy orthologs and a low duplication rate (0.3% and 0.5%) for two assemblies. Through resequencing and population genomic analyses of six subspecies, we have curated invaluable genotype data that underscores the adaptive evolution of chukar in response to both arid and high-altitude environments. These data will significantly contribute to research on how chukars adaptively evolve to cope with desertification and alpine climates.
类型	Article ; Data Paper
语种	英语
开放获取类型	gold, Green Published
收录类别	SCI-E
WOS记录号	WOS:001156562600003
WOS关键词	PARTRIDGE ; CONSERVATION ; PHASIANIDAE ; FRAMEWORK ; ALIGNMENT ; SEQUENCE ; INSIGHT
WOS类目	Multidisciplinary Sciences
WOS研究方向	Science & Technology - Other Topics
资源类型	期刊论文
条目标识符	http://119.78.100.177/qdio/handle/2XILL650/405555
推荐引用方式 GB/T 7714	Zhou, Hao,Huang, Xunhe,Liu, Jiajia,et al. De novo Phased Genome Assembly, Annotation and Population Genotyping of Alectoris Chukar[J],2024,11(1).
APA	Zhou, Hao.,Huang, Xunhe.,Liu, Jiajia.,Ding, Jinmei.,Xu, Ke.,...&Meng, He.(2024).De novo Phased Genome Assembly, Annotation and Population Genotyping of Alectoris Chukar.SCIENTIFIC DATA,11(1).
MLA	Zhou, Hao,et al."De novo Phased Genome Assembly, Annotation and Population Genotyping of Alectoris Chukar".SCIENTIFIC DATA 11.1(2024).