干旱区生态环境知识资源中心(Arid): A highly contiguous genome assembly for the pocket mouse Perognathus longimembris longimembris

Arid

DOI	10.1093/jhered/esad060
	A highly contiguous genome assembly for the pocket mouse Perognathus longimembris longimembris
	Kozak, Krzysztof M.; Escalona, Merly; Chumchim, Noravit; Fairbairn, Colin; Marimuthu, Mohan P. A.; Nguyen, Oanh; Sahasrabudhe, Ruta; Seligmann, William; Conroy, Chris; Patton, James L.; Bowie, Rauri C. K.; Nachman, Michael W.
通讯作者	Kozak, KM
来源期刊	JOURNAL OF HEREDITY
ISSN	0022-1503
EISSN	1465-7333
出版年	2024
卷号	115 期号:1 页码:130-138
英文摘要	The little pocket mouse, Perognathus longimembris, and its nine congeners are small heteromyid rodents found in arid and seasonally arid regions of Western North America. The genus is characterized by behavioral and physiological adaptations to dry and often harsh environments, including nocturnality, seasonal torpor, food caching, enhanced osmoregulation, and a well-developed sense of hearing. Here we present a genome assembly of Perognathus longimembris longimembris generated from PacBio HiFi long read and Omni-C chromatin-proximity sequencing as part of the California Conservation Genomics Project. The assembly has a length of 2.35 Gb, contig N50 of 11.6 Mb, scaffold N50 of 73.2 Mb, and includes 93.8% of the BUSCO Glires genes. Interspersed repetitive elements constitute 41.2% of the genome. A comparison with the highly endangered Pacific pocket mouse, P. l. pacificus, reveals broad synteny. These new resources will enable studies of local adaptation, genetic diversity, and conservation of threatened taxa.
英文关键词	California Conservation Genomics Project comparative genomics conservation genetics Heteromyidae Perognathus repetitive elements
类型	Article
语种	英语
开放获取类型	Green Published, hybrid
收录类别	SCI-E
WOS记录号	WOS:001090287400001
WOS关键词	QUALITY ASSESSMENT ; HETEROMYIDAE ; EVOLUTION ; DATABASE ; TOOL
WOS类目	Evolutionary Biology ; Genetics & Heredity
WOS研究方向	Evolutionary Biology ; Genetics & Heredity
资源类型	期刊论文
条目标识符	http://119.78.100.177/qdio/handle/2XILL650/404535
推荐引用方式 GB/T 7714	Kozak, Krzysztof M.,Escalona, Merly,Chumchim, Noravit,et al. A highly contiguous genome assembly for the pocket mouse Perognathus longimembris longimembris[J],2024,115(1):130-138.
APA	Kozak, Krzysztof M..,Escalona, Merly.,Chumchim, Noravit.,Fairbairn, Colin.,Marimuthu, Mohan P. A..,...&Nachman, Michael W..(2024).A highly contiguous genome assembly for the pocket mouse Perognathus longimembris longimembris.JOURNAL OF HEREDITY,115(1),130-138.
MLA	Kozak, Krzysztof M.,et al."A highly contiguous genome assembly for the pocket mouse Perognathus longimembris longimembris".JOURNAL OF HEREDITY 115.1(2024):130-138.