干旱区生态环境知识资源中心(Arid): Mitogenome Assembly Reveals Gene Migration and RNA Editing Events in Plateau Hongliu (Myricaria elegans Royle.)

Arid

DOI	10.3390/f15050835
	Mitogenome Assembly Reveals Gene Migration and RNA Editing Events in Plateau Hongliu (Myricaria elegans Royle.)
	Li, Xue; Wu, Hao; Hu, Xingyao; Wu, Yunhua; Nie, Feng; Su, Tao; Han, Mei; Cao, Fuliang
通讯作者	Su, T ; Han, M
来源期刊	FORESTS
EISSN	1999-4907
出版年	2024
卷号	15 期号:5
英文摘要	The Plateau Hongliu (Myricaria elegans Royle.) is a woody shrub halophyte that thrives in arid areas of western Tibet, in the Himalayan Mountains. It is acclaimed as superior in saline stress acclimation and as a critical pharmaceutical resource of the Tibetan traditional herb. Nevertheless, the mitogenome in the genus Myricaria remains unknown. Here, using the Illumina and PacBio sequencing assays, the first complete mitogenome of the M. elegans revealed a multi-branched skeleton with a total length of 416,354 bp and GC content of 44.33%, comprising two circular molecules (M1 and 2). The complete mitogenome annotates 31 unique protein-encoding genes (PEGs), fifteen tRNAs, and three rRNA genes. The UAA exhibits the most prominent codon usage preference as a termination, followed by UUA codons for leucine. The mitogenome contains 99 simple sequence repeats and 353 pairs of dispersed repeats, displaying the most frequent in palindromic repeats. Gene transfer analyses identified 8438 bp of 18 homologous fragments from the plastome, accounting for 2.03% of the total length. Using the PREP suite, 350 C-U RNA editing sites were predicted, of which nad4 and ccmB were on the top frequency. Syntenic and phylogenetic analyses suggested weakly conserved patterns of M. elegans in Caryophyllales owing to the genome rearrangement. In summary, the deciphered unique features and complexities of the mitogenome in M. elegans provide novel insights into understanding the evolution and biological conservation underlying climate resilience in halophytes.
英文关键词	Myricaria elegans halophyte mitogenome RNA editing genome recombination
类型	Article
语种	英语
开放获取类型	gold
收录类别	SCI-E
WOS记录号	WOS:001232316700001
WOS关键词	MITOCHONDRIAL GENOME ; SEQUENCE ; DNA ; EVOLUTION ; ALIGNMENT ; DYNAMICS ; MUTATION ; INTRON ; PLANTS ; L.
WOS类目	Forestry
WOS研究方向	Forestry
资源类型	期刊论文
条目标识符	http://119.78.100.177/qdio/handle/2XILL650/403795
推荐引用方式 GB/T 7714	Li, Xue,Wu, Hao,Hu, Xingyao,et al. Mitogenome Assembly Reveals Gene Migration and RNA Editing Events in Plateau Hongliu (Myricaria elegans Royle.)[J],2024,15(5).
APA	Li, Xue.,Wu, Hao.,Hu, Xingyao.,Wu, Yunhua.,Nie, Feng.,...&Cao, Fuliang.(2024).Mitogenome Assembly Reveals Gene Migration and RNA Editing Events in Plateau Hongliu (Myricaria elegans Royle.).FORESTS,15(5).
MLA	Li, Xue,et al."Mitogenome Assembly Reveals Gene Migration and RNA Editing Events in Plateau Hongliu (Myricaria elegans Royle.)".FORESTS 15.5(2024).