干旱区生态环境知识资源中心(Arid): Conuping BSA-Seq and RNA-Seq Reveal the Molecular Pathway and Genes Associated with the Plant Height of Foxtail Millet (Setaria italica)

Arid

DOI	10.3390/ijms231911824
	Conuping BSA-Seq and RNA-Seq Reveal the Molecular Pathway and Genes Associated with the Plant Height of Foxtail Millet (Setaria italica)
	Gao, Yongbin; Yuan, Yuhao; Zhang, Xiongying; Song, Hui; Yang, Qinghua; Yang, Pu; Gao, Xiaoli; Gao, Jinfeng; Feng, Baili
通讯作者	Feng, BL
来源期刊	INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES
EISSN	1422-0067
出版年	2022
卷号	23 期号:19
英文摘要	Foxtail millet (Setaria italica) plays an important role in C4 crop research and agricultural development in arid areas due to its short growth period, drought tolerance, and barren tolerance. Exploration of the dwarfing mechanism and the dwarf genes of foxtail millet can provide a reference for dwarf breeding and dwarf research of other C4 crops. In this study, genetic analysis was performed using phenotypic data, candidate genes were screened by bulk segregant analysis sequencing (BSA-Seq); differentially expressed genes and metabolic pathways in different strains of high samples were analyzed by RNA sequencing (RNA-Seq). The association analysis of BSA-Seq and RNA-Seq further narrowed the candidate range. As a result, a total of three quantitative trait loci (QTLs) and nine candidate genes related to plant height were obtained on chromosomes I and IX. Based on the functional prediction of the candidate genes, we propose a hypothetical mechanism for the formation of millet dwarfing, in which, metabolism and MAPK signaling play important roles in the formation of foxtail millet plant height.
英文关键词	foxtail millet plant height BSA-Seq RNA-Seq
类型	Article
语种	英语
开放获取类型	Green Published, gold
收录类别	SCI-E
WOS记录号	WOS:000867754300001
WOS关键词	ACTIVATED PROTEIN-KINASE ; SEGREGANT ANALYSIS ; DWARFING GENES ; CELL-WALL ; ARABIDOPSIS ; RICE ; TRANSPORTER ; CASCADES ; GROWTH ; IDENTIFICATION
WOS类目	Biochemistry & Molecular Biology ; Chemistry, Multidisciplinary
WOS研究方向	Biochemistry & Molecular Biology ; Chemistry
资源类型	期刊论文
条目标识符	http://119.78.100.177/qdio/handle/2XILL650/393200
推荐引用方式 GB/T 7714	Gao, Yongbin,Yuan, Yuhao,Zhang, Xiongying,et al. Conuping BSA-Seq and RNA-Seq Reveal the Molecular Pathway and Genes Associated with the Plant Height of Foxtail Millet (Setaria italica)[J],2022,23(19).
APA	Gao, Yongbin.,Yuan, Yuhao.,Zhang, Xiongying.,Song, Hui.,Yang, Qinghua.,...&Feng, Baili.(2022).Conuping BSA-Seq and RNA-Seq Reveal the Molecular Pathway and Genes Associated with the Plant Height of Foxtail Millet (Setaria italica).INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES,23(19).
MLA	Gao, Yongbin,et al."Conuping BSA-Seq and RNA-Seq Reveal the Molecular Pathway and Genes Associated with the Plant Height of Foxtail Millet (Setaria italica)".INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES 23.19(2022).