干旱区生态环境知识资源中心(Arid): Genome sequence of a Papaya ringspot virus from khejri (Prosopis cineraria) transcriptome from India

Arid

DOI	10.4149/av_2022_409
	Genome sequence of a Papaya ringspot virus from khejri (Prosopis cineraria) transcriptome from India
	Prajapati, Malyaj Rajeev; Singh, Jitender; Kumar, Pankaj; Baranwal, Virendra Kumar
通讯作者	Singh, J
来源期刊	ACTA VIROLOGICA
ISSN	0001-723X
EISSN	1336-2305
出版年	2022
卷号	66 期号:4 页码:376-379
英文摘要	. - Prosopis cineraria Druce (khejri), a member of the Fabaceae family, is an essential legu-minous plant and agri-horticultural crop, which helps to protect the ecology of desert and semi-arid areas. Using the public domain RNA-seq dataset, we aimed to reveal the viral spectrum of khejri, which is still unexplored. Following quality control, 111,497 contigs (> 200 nt) were created by de novo assembly of 24,081,663 reads. The presence of one contig of 10316 nt related to Papaya ringspot virus (PRSV) with sequence identity 83.20%-93.21% was identified through BLASTx analysis, and 3,650 (0.02%) reads were mapped using full-length PRSV sequence as reference. Pairwise sequencing analysis revealed that the nucleotide and amino acid sequences of the complete genome sequence (BK061298) shared 84.30%-95.54% and 86.38%-96.48% similarity with other PRSV genomes, respectively. Phylogenetic analysis revealed that this virus isolate is closely related to PRSV isolate WB (host: Carica papaya; Acc. No. LC482263). Our findings show that Prosopis cineraria (khejri) is a novel host plant of PRSV in India by utilizing khejri transcriptome data and bioinformatics analysis.
英文关键词	Prosopis cineraria Potyvirus Papaya ringspot virus RNA-seq phylogenetics India
类型	Article
语种	英语
收录类别	SCI-E
WOS记录号	WOS:000962398600009
WOS类目	Virology
WOS研究方向	Virology
资源类型	期刊论文
条目标识符	http://119.78.100.177/qdio/handle/2XILL650/391542
推荐引用方式 GB/T 7714	Prajapati, Malyaj Rajeev,Singh, Jitender,Kumar, Pankaj,et al. Genome sequence of a Papaya ringspot virus from khejri (Prosopis cineraria) transcriptome from India[J],2022,66(4):376-379.
APA	Prajapati, Malyaj Rajeev,Singh, Jitender,Kumar, Pankaj,&Baranwal, Virendra Kumar.(2022).Genome sequence of a Papaya ringspot virus from khejri (Prosopis cineraria) transcriptome from India.ACTA VIROLOGICA,66(4),376-379.
MLA	Prajapati, Malyaj Rajeev,et al."Genome sequence of a Papaya ringspot virus from khejri (Prosopis cineraria) transcriptome from India".ACTA VIROLOGICA 66.4(2022):376-379.