干旱区生态环境知识资源中心(Arid): Phylogenomics of alligator lizards elucidate diversification patterns across the Mexican Transition Zone and support the recognition of a new genus

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DOI	10.1093/biolinnean/blab139
	Phylogenomics of alligator lizards elucidate diversification patterns across the Mexican Transition Zone and support the recognition of a new genus
	Blair, Christopher; Bryson, Robert W., Jr.; Garcia-Vazquez, Uri O.; Nieto-Montes De Oca, Adrian; Lazcano, David; Mccormack, John E.; Klicka, John
通讯作者	Blair, C (corresponding author)，CUNY, Dept Biol Sci, New York City Coll Technol, 285 Jay St, Brooklyn, NY 11201 USA. ; Blair, C (corresponding author)，CUNY, Biol PhD Program, Grad Ctr, 365 5th Ave, New York, NY 10016 USA.
来源期刊	BIOLOGICAL JOURNAL OF THE LINNEAN SOCIETY
ISSN	0024-4066
EISSN	1095-8312
出版年	2022
卷号	135 期号:1
英文摘要	Genomic data continue to advance our understanding of species limits and biogeographic patterns. However, there is still no consensus regarding appropriate methods of phylogenomic analysis that make the best use of these heterogeneous data sets. In this study, we used thousands of ultraconserved element (UCE) loci from alligator lizards in the genus Gerrhonotus to compare and contrast species trees inferred using multiple contemporary methods and provide a time frame for biological diversification across the Mexican Transition Zone (MTZ). Concatenated maximum likelihood (ML) and Bayesian analyses provided highly congruent results, with differences limited to poorly supported nodes. Similar topologies were inferred from coalescent analyses in Bayesian Phylogenetics and Phylogeography and SVDquartets, albeit with lower support for some nodes. All divergence times fell within the Miocene, linking speciation to local Neogene vicariance and/or global cooling trends following the mid-Miocene Climatic Optimum. We detected a high level of genomic divergence for a morphologically distinct species restricted to the arid mountains of north-eastern Mexico, and erected a new genus to better reflect evolutionary history. In summary, our results further advocate leveraging the strengths and weaknesses of concatenation and coalescent methods, provide evidence for old divergences for alligator lizards, and indicate that the MTZ continues to harbour substantial unrecognized diversity.
英文关键词	biogeography coalescence concatenation Gerrhonotus phylogenomics
类型	Article
语种	英语
收录类别	SCI-E
WOS记录号	WOS:000736066000002
WOS关键词	SPECIES TREE ESTIMATION ; ULTRACONSERVED ELEMENTS ; HISTORICAL BIOGEOGRAPHY ; MOLECULAR SYSTEMATICS ; PHYLOGEOGRAPHY ; SPECIATION ; HIGHLANDS ; INFERENCE ; ANGUIDAE ; SQUAMATA
WOS类目	Evolutionary Biology
WOS研究方向	Evolutionary Biology
资源类型	期刊论文
条目标识符	http://119.78.100.177/qdio/handle/2XILL650/376954
作者单位	[Blair, Christopher] CUNY, Dept Biol Sci, New York City Coll Technol, 285 Jay St, Brooklyn, NY 11201 USA; [Blair, Christopher] CUNY, Biol PhD Program, Grad Ctr, 365 5th Ave, New York, NY 10016 USA; [Bryson, Robert W., Jr.; Klicka, John] Univ Washington, Dept Biol, Seattle, WA 98195 USA; [Bryson, Robert W., Jr.; Klicka, John] Univ Washington, Burke Museum Nat Hist & Culture, Seattle, WA 98195 USA; [Bryson, Robert W., Jr.; Mccormack, John E.] Occidental Coll, Moore Lab Zool, Los Angeles, CA 90041 USA; [Garcia-Vazquez, Uri O.] Univ Nacl Autonoma Mexico, Lab Sistemat Mol, Unidad Multidisiplinaria Invest Expt, Fac Estudios Super Zaragoza, Ciudad De Mexico 09230, Mexico; [Nieto-Montes De Oca, Adrian] Univ Nacl Autonoma Mexico, Dept Biol Evolut, Fac Ciencias, Ciudad De Mexico 04510, Mexico; [Lazcano, David] Univ Autonoma Nuevo Leon, Lab Herpetol, San Nicolas De Los Garza 66440, Nuevo Leon, Mexico
推荐引用方式 GB/T 7714	Blair, Christopher,Bryson, Robert W., Jr.,Garcia-Vazquez, Uri O.,et al. Phylogenomics of alligator lizards elucidate diversification patterns across the Mexican Transition Zone and support the recognition of a new genus[J],2022,135(1).
APA	Blair, Christopher.,Bryson, Robert W., Jr..,Garcia-Vazquez, Uri O..,Nieto-Montes De Oca, Adrian.,Lazcano, David.,...&Klicka, John.(2022).Phylogenomics of alligator lizards elucidate diversification patterns across the Mexican Transition Zone and support the recognition of a new genus.BIOLOGICAL JOURNAL OF THE LINNEAN SOCIETY,135(1).
MLA	Blair, Christopher,et al."Phylogenomics of alligator lizards elucidate diversification patterns across the Mexican Transition Zone and support the recognition of a new genus".BIOLOGICAL JOURNAL OF THE LINNEAN SOCIETY 135.1(2022).