干旱区生态环境知识资源中心(Arid): Draft Genome Sequence of Oceanobacillus jordanicus Strain GSFE11, a Halotolerant Plant Growth-Promoting Bacterial Endophyte Isolated From the Jordan Valley

Arid

DOI	10.1177/11769343211071114
	Draft Genome Sequence of Oceanobacillus jordanicus Strain GSFE11, a Halotolerant Plant Growth-Promoting Bacterial Endophyte Isolated From the Jordan Valley
	Alhindi, Tareq; Albdaiwi, Randa
通讯作者	Alhindi, T (corresponding author)，Univ Jordan, Sch Sci, Dept Biol Sci, Amman 11942, Jordan.
来源期刊	EVOLUTIONARY BIOINFORMATICS
ISSN	1176-9343
出版年	2022
卷号	18
英文摘要	The bacterium Oceanobacillus jordanicus strain GSFE11 is a halotolerant endophyte isolated from sterilized roots of Durum wheat (Triticum turgidum ssp. Durum) growing in hot and arid environments of Ghor Safi area in the Jordan Valley. The draft genome sequence and annotation of this plant growth-promoting endophytic bacterium are reported in this study. The draft genome sequence of Oceanobacillus jordanicus strain GSFE11 has 3 839 208 bp with a G + C content of 39.09%. A total of 3893 protein-coding genes and 68 RNA coding genes were predicted. Several putative genes that are involved in secretion and delivery systems, transport, adhesion, motility, membrane proteins, plant cell wall modification, and detoxification were identified, some are characteristics of endophytes lifestyle including genes that are involved in metabolism of carbohydrate, genes for xylose, fructose and chitin utilization, quinone cofactors biosynthesis, genes associated with nitrogen, sulfur, phosphate and iron acquisition, in addition to genes involved in the biosynthesis of plant hormone auxin. This study highlights the importance of using genome analysis and phylogenomic analysis to resolve the differences between closely related species, such analysis showed Oceanobacillus jordanicus strain GSFE11 to be a new species closely related to Oceanobacillus picturae (genome size 3.67 Mb), Oceanobacillus jordanicus has higher a number of predicted genes compared with Oceanobacillus picturae (3961 genes vs 3823 genes).
英文关键词	Bacterial endophyte durum wheat halotolerance Oceanobacillus jordanicus whole genome sequencing
类型	Article
语种	英语
开放获取类型	Green Published, gold
收录类别	SCI-E
WOS记录号	WOS:000751382400001
WOS关键词	SP NOV. ; SPECIES DELINEATION ; RESOURCE ; PICTURAE ; GENE
WOS类目	Evolutionary Biology ; Mathematical & Computational Biology
WOS研究方向	Evolutionary Biology ; Mathematical & Computational Biology
资源类型	期刊论文
条目标识符	http://119.78.100.177/qdio/handle/2XILL650/376729
作者单位	[Alhindi, Tareq] Univ Jordan, Sch Sci, Dept Biol Sci, Amman 11942, Jordan; [Albdaiwi, Randa] Univ Jordan, Sch Agr, Dept Land Water & Environm, Amman, Jordan
推荐引用方式 GB/T 7714	Alhindi, Tareq,Albdaiwi, Randa. Draft Genome Sequence of Oceanobacillus jordanicus Strain GSFE11, a Halotolerant Plant Growth-Promoting Bacterial Endophyte Isolated From the Jordan Valley[J],2022,18.
APA	Alhindi, Tareq,&Albdaiwi, Randa.(2022).Draft Genome Sequence of Oceanobacillus jordanicus Strain GSFE11, a Halotolerant Plant Growth-Promoting Bacterial Endophyte Isolated From the Jordan Valley.EVOLUTIONARY BIOINFORMATICS,18.
MLA	Alhindi, Tareq,et al."Draft Genome Sequence of Oceanobacillus jordanicus Strain GSFE11, a Halotolerant Plant Growth-Promoting Bacterial Endophyte Isolated From the Jordan Valley".EVOLUTIONARY BIOINFORMATICS 18(2022).