干旱区生态环境知识资源中心(Arid): p The Chinese pine genome and methylome unveil key features of conifer evolution

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DOI	10.1016/j.cell.2021.12.006
	p The Chinese pine genome and methylome unveil key features of conifer evolution
	Niu, Shihui; Li, Jiang; Bo, Wenhao; Yang, Weifei; Zuccolo, Andrea; Giacomello, Stefania; Chen, Xi; Han, Fangxu; Yang, Junhe; Song, Yitong; Nie, Yumeng; Zhou, Biao; Wang, Peiyi; Zuo, Quan; Zhang, Hui; Ma, Jingjing; Wang, Jun; Wang, Lvji; Zhu, Qianya; Zhao, Huanhuan; Liu, Zhanmin; Zhang, Xuemei; Liu, Tao; Pei, Surui; Li, Zhimin; Hu, Yao; Yang, Yehui; Li, Wenzhao; Zan, Yanjun; Zhou, Linghua; Lin, Jinxing; Yuan, Tongqi; Li, Wei; Li, Yue; Wei, Hairong; Wu, Harry X.
通讯作者	Niu, SH ; Wu, HX (corresponding author)，Beijing Forestry Univ, Coll Biol Sci & Technol,Tree & Ornamental Plant B, Minist Educ,Beijing Adv Innovat Ctr Tree Breeding, Natl Engn Lab Tree Breeding,Key Lab Genet & Breed, Beijing 100083, Peoples R China. ; Wu, HX (corresponding author)，Swedish Univ Agr Sci, Umea Plant Sci Ctr, Dept Forest Genet & Plant Physiol, Linnaeus Vag 6, S-90183 Umea, Sweden. ; Wei, HR (corresponding author)，Michigan Technol Univ, Coll Forest Resources & Environm Sci, Houghton, MI 49931 USA. ; Wu, HX (corresponding author)，CSIRO Natl Res Collect Australia, Black Mt Lab, Canberra, ACT 2601, Australia.
来源期刊	CELL
ISSN	0092-8674
EISSN	1097-4172
出版年	2022
卷号	185 期号:1 页码:204-+
英文摘要	Conifers dominate the world's forest ecosystems and are the most widely planted tree species. Their giant and complex genomes present great challenges for assembling a complete reference genome for evolutionary and genomic studies. We present a 25.4-Gb chromosome-level assembly of Chinese pine (Pinus tabuliformis) and revealed that its genome size is mostly attributable to huge intergenic regions and long introns with high transposable element (TE) content. Large genes with long introns exhibited higher expressions levels. Despite a lack of recent whole-genome duplication, 91.2% of genes were duplicated through dispersed duplication, and expanded gene families are mainly related to stress responses, which may underpin conifers' adaptation, particularly in cold and/or arid conditions. The reproductive regulation network is distinct compared with angiosperms. Slow removal of TEs with high-level methylation may have contributed to genomic expansion. This study provides insights into conifer evolution and resources for advancing research on conifer adaptation and development.
类型	Article
语种	英语
开放获取类型	Green Published, hybrid
收录类别	SCI-E
WOS记录号	WOS:000746989500002
WOS关键词	TRANSCRIPTION FACTORS ; DNA METHYLATION ; READ ALIGNMENT ; GENES ; ANNOTATION ; SEQUENCE ; ANGIOSPERMS ; ASSEMBLIES ; REVEALS ; LIGHT
WOS类目	Biochemistry & Molecular Biology ; Cell Biology
WOS研究方向	Biochemistry & Molecular Biology ; Cell Biology
资源类型	期刊论文
条目标识符	http://119.78.100.177/qdio/handle/2XILL650/376600
作者单位	[Niu, Shihui; Li, Jiang; Bo, Wenhao; Chen, Xi; Han, Fangxu; Yang, Junhe; Song, Yitong; Nie, Yumeng; Zhou, Biao; Wang, Peiyi; Zuo, Quan; Zhang, Hui; Ma, Jingjing; Wang, Jun; Wang, Lvji; Zhu, Qianya; Zhao, Huanhuan; Lin, Jinxing; Yuan, Tongqi; Li, Wei; Li, Yue; Wu, Harry X.] Beijing Forestry Univ, Coll Biol Sci & Technol,Tree & Ornamental Plant B, Minist Educ,Beijing Adv Innovat Ctr Tree Breeding, Natl Engn Lab Tree Breeding,Key Lab Genet & Breed, Beijing 100083, Peoples R China; [Yang, Weifei; Zhang, Xuemei; Liu, Tao; Pei, Surui; Li, Zhimin] Annord Gene Technol Beijing Co Ltd, Beijing 100180, Peoples R China; [Zuccolo, Andrea] King Abdullah Univ Sci & Technol, Ctr Desert Agr, Biol & Environm Sci & Engn Div BESE, Thuwal 239556900, Saudi Arabia; [Zuccolo, Andrea] Scuola Super Sant Anna, Inst Life Sci, I-56127 Pisa, Italy; [Giacomello, Stefania] KTH Royal Inst Technol, SciLife Lab, Tomtebodavagen 23, SE-17165 Stockholm, Sweden; [Liu, Zhanmin] Qigou State Owned Forest Farm, Pingquan 067509, Hebei, Peoples R Ch...
推荐引用方式 GB/T 7714	Niu, Shihui,Li, Jiang,Bo, Wenhao,et al. p The Chinese pine genome and methylome unveil key features of conifer evolution[J],2022,185(1):204-+.
APA	Niu, Shihui.,Li, Jiang.,Bo, Wenhao.,Yang, Weifei.,Zuccolo, Andrea.,...&Wu, Harry X..(2022).p The Chinese pine genome and methylome unveil key features of conifer evolution.CELL,185(1),204-+.
MLA	Niu, Shihui,et al."p The Chinese pine genome and methylome unveil key features of conifer evolution".CELL 185.1(2022):204-+.