干旱区生态环境知识资源中心(Arid): Characterization of the complete chloroplast genome of Prosopis tamarugo (Prosopis, Leguminosae), an endangered endemic tree species from the Atacama Desert

Arid

DOI	10.4067/S0717-92002021000300365
	Characterization of the complete chloroplast genome of Prosopis tamarugo (Prosopis, Leguminosae), an endangered endemic tree species from the Atacama Desert
	Contreras-Diaz, Roberto; van den Brink, Liesbeth; Jose Navarrete-Fuentes, Maria; Arias-Aburto, Mariana
通讯作者	Contreras-Diaz, R (corresponding author)，Univ Atacama, Ctr Reg Invest & Desarrollo Sustentable Atacama C, Copayapu 485, Copiapo, Chile.
来源期刊	BOSQUE
ISSN	0717-9200
出版年	2021
卷号	42 期号:3
英文摘要	Prosopis tamarugo (Prosopis, Sect. Strombocarpa) is an important endangered tree species from the Atacama Desert (Chile). However, this species requires urgent conservation measures, for which it is necessary to evaluate their genetic diversity. Here, we present the characterization of the complete chloroplast genome of P. tamantgo; the first complete chloroplast of a species from the Strombocarpa section, obtained by next generation sequencing (NGS) methods. The complete chloroplast contains 161,575 bp and a total of 129 genes. A phylogenetic analysis of four Prosopis plastomes revealed that P. tamarugo is a sister species of the other Prosopis species albeit having smaller chloroplast sequence compared to those of other Prosopis species. Nine DNAcp markers were detected to distinguish between haplotypes. Therefore, the chloroplast sequence of P. tamarugo could be highly valuable for upcoming phylogenetic studies.
英文关键词	Strombocarpa section NGS plastome genome variability
类型	Article
语种	英语
开放获取类型	gold
收录类别	SCI-E
WOS记录号	WOS:000738622000018
WOS关键词	GENUS PROSOPIS ; EXTRACTION ; HISTORY
WOS类目	Ecology ; Forestry
WOS研究方向	Environmental Sciences & Ecology ; Forestry
资源类型	期刊论文
条目标识符	http://119.78.100.177/qdio/handle/2XILL650/376020
作者单位	[Contreras-Diaz, Roberto; Jose Navarrete-Fuentes, Maria; Arias-Aburto, Mariana] Univ Atacama, Ctr Reg Invest & Desarrollo Sustentable Atacama C, Copayapu 485, Copiapo, Chile; [van den Brink, Liesbeth] Univ Tubingen, Plant Ecol Grp, Dept Evolut & Ecol, D-72076 Tubingen, Germany
推荐引用方式 GB/T 7714	Contreras-Diaz, Roberto,van den Brink, Liesbeth,Jose Navarrete-Fuentes, Maria,et al. Characterization of the complete chloroplast genome of Prosopis tamarugo (Prosopis, Leguminosae), an endangered endemic tree species from the Atacama Desert[J],2021,42(3).
APA	Contreras-Diaz, Roberto,van den Brink, Liesbeth,Jose Navarrete-Fuentes, Maria,&Arias-Aburto, Mariana.(2021).Characterization of the complete chloroplast genome of Prosopis tamarugo (Prosopis, Leguminosae), an endangered endemic tree species from the Atacama Desert.BOSQUE,42(3).
MLA	Contreras-Diaz, Roberto,et al."Characterization of the complete chloroplast genome of Prosopis tamarugo (Prosopis, Leguminosae), an endangered endemic tree species from the Atacama Desert".BOSQUE 42.3(2021).