干旱区生态环境知识资源中心(Arid): Improving phylogenetic resolution of the Lamiales using the complete plastome sequences of six Penstemon species

Arid

DOI	10.1371/journal.pone.0261143
	Improving phylogenetic resolution of the Lamiales using the complete plastome sequences of six Penstemon species
	Stettler, Jason M.; Stevens, Mikel R.; Meservey, Lindsey M.; Crump, W. Wesley; Grow, Jed D.; Porter, Sydney J.; Love, L. Stephen; Maughan, Peter J.; Jellen, Eric N.
通讯作者	Stettler, JM (corresponding author)，Brigham Young Univ, Dept Plant & Wildlife Sci, Provo, UT 84602 USA.
来源期刊	PLOS ONE
ISSN	1932-6203
出版年	2021
卷号	16 期号:12
英文摘要	The North American endemic genus Penstemon (Mitchell) has a recent geologic origin of ca. 3.6 million years ago (MYA) during the Pliocene/Pleistocene transition and has undergone a rapid adaptive evolutionary radiation with ca. 285 species of perennial forbs and sub-shrubs. Penstemon is divided into six subgenera occupying all North American habitats including the Arctic tundra, Central American tropical forests, alpine meadows, arid deserts, and temperate grasslands. Due to the rapid rate of diversification and speciation, previous phylogenetic studies using individual and concatenated chloroplast sequences have failed to resolve many polytomic clades. We investigated the efficacy of utilizing the plastid genomes (plastomes) of 29 species in the Lamiales order, including five newly sequenced Penstemon plastomes, for analyzing phylogenetic relationships and resolving problematic clades. We compared whole-plastome based phylogenies to phylogenies based on individual gene sequences (matK, ndhF, psaA, psbA, rbcL, rpoC2, and rps2) and concatenated sequences. We also We found that our whole-plastome based phylogeny had higher nodal support than all other phylogenies, which suggests that it provides greater accuracy in describing the hierarchal relationships among taxa as compared to other methods. We found that the genus Penstemon forms a monophyletic clade sister to, but separate from, the Old World taxa of the Plantaginaceae family included in our study. Our whole-plastome based phylogeny also supports the rearrangement of the Scrophulariaceae family and improves resolution of major clades and genera of the Lamiales.
类型	Article
语种	英语
开放获取类型	Green Published, gold
收录类别	SCI-E
WOS记录号	WOS:000754828900037
WOS关键词	APIACEAE SUBFAMILY APIOIDEAE ; CHLOROPLAST GENOME SEQUENCE ; DNA-SEQUENCES ; NONCODING REGIONS ; SSR-MARKERS ; RBCL ; NUCLEAR ; DISINTEGRATION ; ORGANIZATION ; ANGIOSPERMS
WOS类目	Multidisciplinary Sciences
WOS研究方向	Science & Technology - Other Topics
资源类型	期刊论文
条目标识符	http://119.78.100.177/qdio/handle/2XILL650/375674
作者单位	[Stettler, Jason M.; Stevens, Mikel R.; Porter, Sydney J.; Maughan, Peter J.; Jellen, Eric N.] Brigham Young Univ, Dept Plant & Wildlife Sci, Provo, UT 84602 USA; [Meservey, Lindsey M.] Stanford Univ, Dept Biol, Stanford, CA 94305 USA; [Crump, W. Wesley] Washington State Univ, Irrigated Agr Res & Extens Ctr, Dept Hort, Prosser, WA USA; [Grow, Jed D.] North Dakota State Univ, Dept Plant Sci, Fargo, ND USA; [Love, L. Stephen] Univ Idaho, Aberdeen Res & Extens Ctr, Aberdeen, ID USA
推荐引用方式 GB/T 7714	Stettler, Jason M.,Stevens, Mikel R.,Meservey, Lindsey M.,et al. Improving phylogenetic resolution of the Lamiales using the complete plastome sequences of six Penstemon species[J],2021,16(12).
APA	Stettler, Jason M..,Stevens, Mikel R..,Meservey, Lindsey M..,Crump, W. Wesley.,Grow, Jed D..,...&Jellen, Eric N..(2021).Improving phylogenetic resolution of the Lamiales using the complete plastome sequences of six Penstemon species.PLOS ONE,16(12).
MLA	Stettler, Jason M.,et al."Improving phylogenetic resolution of the Lamiales using the complete plastome sequences of six Penstemon species".PLOS ONE 16.12(2021).