干旱区生态环境知识资源中心(Arid): Phylotaxogenomics for the Reappraisal of the Genus Roseomonas With the Creation of Six New Genera

Arid

DOI	10.3389/fmicb.2021.677842
	Phylotaxogenomics for the Reappraisal of the Genus Roseomonas With the Creation of Six New Genera
	Rai, Anusha; Jagadeeshwari, Uppada; Deepshikha, Gupta; Smita, Nandardhane; Sasikala, Chintalapati; Ramana, Chintalapati Venkata
通讯作者	Ramana, CV (corresponding author), Univ Hyderabad, Sch Life Sci, Dept Plant Sci, Hyderabad, India. ; Sasikala, C (corresponding author), Univ Hyderabad, Jawaharlal Nehru Technol JNT, Inst Sci & Technol IST, Bacterial Discovery Lab,Ctr Environm, Hyderabad, India.
来源期刊	FRONTIERS IN MICROBIOLOGY
EISSN	1664-302X
出版年	2021
卷号	12
英文摘要	The genus Roseomonas is a significant group of bacteria which is invariably of great clinical and ecological importance. Previous studies have shown that the genus Roseomonas is polyphyletic in nature. Our present study focused on generating a lucid understanding of the phylogenetic framework for the re-evaluation and reclassification of the genus Roseomonas. Phylogenetic studies based on the 16S rRNA gene and 92 concatenated genes suggested that the genus is heterogeneous, forming seven major groups. Existing Roseomonas species were subjected to an array of genomic, phenotypic, and chemotaxonomic analyses in order to resolve the heterogeneity. Genomic similarity indices (dDDH and ANI) indicated that the members were well-defined at the species level. The Percentage of Conserved Proteins (POCP) and the average Amino Acid Identity (AAI) values between the groups of the genus Roseomonas and other interspersing members of the family Acetobacteraceae were below 65 and 70%, respectively. The pan-genome evaluation depicted that the pan-genome was an open type and the members shared 958 core genes. This claim of reclassification was equally supported by the phenotypic and chemotaxonomic differences between the groups. Thus, in this study, we propose to re-evaluate and reclassify the genus Roseomonas and propose six novel genera as Pararoseomonas gen. nov., Falsiroseomonas gen. nov., Paeniroseomonas gen. nov., Plastoroseomonas gen. nov., Neoroseomonas gen. nov., and Pseudoroseomonas gen. nov.
英文关键词	phylotaxogenomics average amino acid Identity (AAI) percentage of conserved proteins (POCP) reclassification Roseomonas
类型	Article
语种	英语
开放获取类型	gold, Green Published
收录类别	SCI-E
WOS记录号	WOS:000717571500001
WOS关键词	PROPOSED MINIMAL STANDARDS ; NOV-SP NOV. ; SP. NOV. ; ALPHA-1 SUBCLASS ; TEICHOCOCCUS-LUDIPUERITIAE ; BACTERIOCHLOROPHYLL-A ; EMENDED DESCRIPTION ; MURICOCCUS-ROSEUS ; BACTERIUM ; DESERT
WOS类目	Microbiology
WOS研究方向	Microbiology
资源类型	期刊论文
条目标识符	http://119.78.100.177/qdio/handle/2XILL650/368533
作者单位	[Rai, Anusha; Deepshikha, Gupta; Smita, Nandardhane; Ramana, Chintalapati Venkata] Univ Hyderabad, Sch Life Sci, Dept Plant Sci, Hyderabad, India; [Jagadeeshwari, Uppada; Sasikala, Chintalapati] Univ Hyderabad, Jawaharlal Nehru Technol JNT, Inst Sci & Technol IST, Bacterial Discovery Lab,Ctr Environm, Hyderabad, India
推荐引用方式 GB/T 7714	Rai, Anusha,Jagadeeshwari, Uppada,Deepshikha, Gupta,et al. Phylotaxogenomics for the Reappraisal of the Genus Roseomonas With the Creation of Six New Genera[J],2021,12.
APA	Rai, Anusha,Jagadeeshwari, Uppada,Deepshikha, Gupta,Smita, Nandardhane,Sasikala, Chintalapati,&Ramana, Chintalapati Venkata.(2021).Phylotaxogenomics for the Reappraisal of the Genus Roseomonas With the Creation of Six New Genera.FRONTIERS IN MICROBIOLOGY,12.
MLA	Rai, Anusha,et al."Phylotaxogenomics for the Reappraisal of the Genus Roseomonas With the Creation of Six New Genera".FRONTIERS IN MICROBIOLOGY 12(2021).