Arid
项目编号1R21AI152394-01
Systems-level genetic patterns underlying disseminated coccidioidomycosis in humans
LUSSIER, YVES A.
主持机构UNIVERSITY OF ARIZONA
开始日期2020
结束日期2022
资助经费244304(USD)
项目类别Non-SBIR/STTR RPGs
资助机构US-NIH(美国国立卫生研究院)
语种英语
国家美国
英文简介PROJECT NARRATIVE We will compare the DNA (whole genome genotype and exome sequencing) of 147 well-phenotyped people who developed disseminated coccidioidomycosis (DCM, aka, disseminated Valley Fever) with that of 388 people who had self-limited pulmonary coccidioidomycosis (PUL) in order to identify genetic patterns and differences associated with risk. In analyzing genotype data, we will look for associations between DCM and human leukocyte antigen (HLA) haplotypes, known immune response variants sets (reQTLs), and biological process pathways. In analyzing exome sequence data, we determine whether DCM patients carry more, or a different distribution of rare, damaging variation in candidate and unbiased biological process pathways.
英文关键词Acute Address adverse outcome African American Alleles Automobile Driving Biochemical Biological Biological Process Biology bone Brain Candidate Disease Gene Caring Case Study Categories causal variant Chronic Clinical clinical care Coccidioides Coccidioidomycosis Code cohort Communicable Diseases Complex Data Databases desert fever design Disease Disease susceptibility DNA Emerging Communicable Diseases Equilibrium Exogenous Factors exome exome sequencing experience Filipino flu Foundations fungus Gene Expression Gene Mutation Genes Genetic genetic architecture Genetic Heterogeneity Genetic Predisposition to Disease genetic risk factor Genetic Variation genome-wide genome-wide analysis Genotype genotyped patients Guidelines Haplotypes Heterogeneity high risk HLA Antigens Human Human Genetics human leukocyte antigen testing IFNGR1 gene IL12RB1 gene Immune Immune response Immune system Immunocompetent Immunogenetics Immunological Models Immunosuppression Infection Inhalation insight Knowledge Life Lung Medical Modeling Molecular Mutation Mycoses National Institute of Allergy and Infectious Disease novel Organ Participant pathogen pathogen exposure Pathogenesis pathogenic fungus Pathology Pathway Analysis Pathway interactions Patients Pattern Phenotype Play Pneumonia Positioning Attribute Predisposition Proteins Quantitative Trait Loci rare variant Recommendation recruit Resistance Resources response Risk risk variant Role Sample Size Sampling Studies Signal Transduction Skin Soil STAT1 gene STAT3 gene Stimulus Symptoms System Systems Analysis Testing Therapeutic Time Variant whole genome
URL152394
资源类型项目
条目标识符http://119.78.100.177/qdio/handle/2XILL650/356176
推荐引用方式
GB/T 7714
LUSSIER, YVES A..Systems-level genetic patterns underlying disseminated coccidioidomycosis in humans.2020.
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