干旱区生态环境知识资源中心(Arid): TGIF-DB: terse genomics interface for developing botany

Arid

DOI	10.1186/s13104-021-05599-4
	TGIF-DB: terse genomics interface for developing botany
	Tsugama, Daisuke; Takano, Tetsuo
通讯作者	Tsugama, D (corresponding author), Univ Tokyo, Asian Nat Environm Sci Ctr ANESC, 1-1-1 Midori Cho, Nishi Tokyo, Tokyo 1880002, Japan.
来源期刊	BMC RESEARCH NOTES
EISSN	1756-0500
出版年	2021
卷号	14 期号:1
英文摘要	Objectives: Pearl millet (Pennisetum glaucum) is a staple cereal crop for semi-arid regions. Its whole genome sequence and deduced putative gene sequences are available. However, the functions of many pearl millet genes are unknown. Situations are similar for other crop species such as garden asparagus (Asparagus officinalis), chickpea (Cicer arietinum) and Tartary buckwheat (Fagopyrum tataricum). The objective of the data presented here was to improve functional annotations of genes of pearl millet, garden asparagus, chickpea and Tartary buckwheat with gene annotations of model plants, to systematically provide such annotations as well as their sequences on a website, and thereby to promote genomics for those crops. Data description: Sequences of genomes and transcripts of pearl millet, garden asparagus, chickpea and Tartary buckwheat were downloaded from a public database. These transcripts were associated with functional annotations of their Arabidopsis thaliana and rice (Oryza sativa) counterparts identified by BLASTX. Conserved domains in protein sequences of those species were identified by the HMMER scan with the Pfam database. The resulting data was deposited in the figshare repository and can be browsed on the Terse Genomics Interface for Developing Botany (TGIF-DB) website (http://webpark2116.sakura.ne.jp/rlgpr/).
英文关键词	Arabidopsis Garden asparagus Chickpea Genomics Pearl millet Plant Rice Tartary buckwheat
类型	Article
语种	英语
开放获取类型	DOAJ Gold, Green Published
收录类别	ESCI
WOS记录号	WOS:000651465600001
WOS关键词	RESOURCE
WOS类目	Biology ; Multidisciplinary Sciences
WOS研究方向	Life Sciences & Biomedicine - Other Topics ; Science & Technology - Other Topics
资源类型	期刊论文
条目标识符	http://119.78.100.177/qdio/handle/2XILL650/352754
作者单位	[Tsugama, Daisuke; Takano, Tetsuo] Univ Tokyo, Asian Nat Environm Sci Ctr ANESC, 1-1-1 Midori Cho, Nishi Tokyo, Tokyo 1880002, Japan
推荐引用方式 GB/T 7714	Tsugama, Daisuke,Takano, Tetsuo. TGIF-DB: terse genomics interface for developing botany[J],2021,14(1).
APA	Tsugama, Daisuke,&Takano, Tetsuo.(2021).TGIF-DB: terse genomics interface for developing botany.BMC RESEARCH NOTES,14(1).
MLA	Tsugama, Daisuke,et al."TGIF-DB: terse genomics interface for developing botany".BMC RESEARCH NOTES 14.1(2021).