干旱区生态环境知识资源中心(Arid): SSR-based evaluation of genetic diversity in populations of Agriophyllum squarrosum L. and Agriophyllum minus Fisch. & Mey. collected in South-East Kazakhstan

Arid

DOI	10.18699/VJ20.664
	SSR-based evaluation of genetic diversity in populations of Agriophyllum squarrosum L. and Agriophyllum minus Fisch. & Mey. collected in South-East Kazakhstan
	Genievskaya, Y.; Karelova, D.; Abugalieva, S.; Zhao, P.; Chen, G.; Turuspekov, Y.
通讯作者	Turuspekov, Y (corresponding author), Inst Plant Biol & Biotechnol, Lab Mol Genet, Alma Ata, Kazakhstan. ; Turuspekov, Y (corresponding author), al Farabi Kazakh Natl Univ, Dept Biodivers & Bioresources, Alma Ata, Kazakhstan.
来源期刊	VAVILOVSKII ZHURNAL GENETIKI I SELEKTSII
ISSN	2500-0462
EISSN	2500-3259
出版年	2020
卷号	24 期号:7 页码:697-704
英文摘要	The development of informative polymorphic DNA markers for poorly studied genera is an important step in population analyses of living organisms, including those that play very important ecological roles in harsh environments, such as desert and semi-desert area. Examples of those poorly studied desert species are Agriophyllum squarrosum L. and Agriophyllum minus Fisch. & Mey. However, a recent RNA-sequencing project in A. squarrosum has proposed a large set of hypothetical SSR (simple sequence repeat) markers. In this work, 11 novel polymorphic SSRs were found due to the screening of 24 randomly selected SSRs for three populations of A. squarrosum and one population of A. minus. The analysis of 11 SSRs revealed 16 polymorphic loci in two Agriophyllum species, 8 polymorphic loci within three populations of A. squarrosum, and 6 polymorphic loci in the population of A. minus. Statistical analyses showed high interspecific, but relatively low intraspecific genetic diversity. The phylogenetic clusterization and population structure analysis have demonstrated a clear segregation of A. minus from A. squarrosum, as well as the separation of population 1 from populations 2 and 3 of A. squarrosum. Thus, we identified the set of novel and informative SSR markers suitable for the study of genetic diversity in Agriophyllum. Key words: sand rice; Agriophyllum squarrosum; Agriophyllum minus; SSR markers; genetic diversity; population structure.
英文关键词	sand rice Agriophyllum squarrosum Agriophyllum minus SSR markers genetic diversity population structure
类型	Article
语种	英语
开放获取类型	DOAJ Gold, Green Published
收录类别	ESCI
WOS记录号	WOS:000598955100002
WOS关键词	SEED BANK ; CHENOPODIACEAE ; MARKERS ; AMPLIFICATION ; COLONIZATION ; SOFTWARE ; NUMBER ; MOQ. ; MAP
WOS类目	Agriculture, Multidisciplinary ; Genetics & Heredity
WOS研究方向	Agriculture ; Genetics & Heredity
来源机构	中国科学院西北生态环境资源研究院
资源类型	期刊论文
条目标识符	http://119.78.100.177/qdio/handle/2XILL650/352709
作者单位	[Genievskaya, Y.; Karelova, D.; Abugalieva, S.; Turuspekov, Y.] Inst Plant Biol & Biotechnol, Lab Mol Genet, Alma Ata, Kazakhstan; [Abugalieva, S.; Turuspekov, Y.] al Farabi Kazakh Natl Univ, Dept Biodivers & Bioresources, Alma Ata, Kazakhstan; [Zhao, P.; Chen, G.] Northwest Inst Ecoenvironm & Resources, Key Lab Stress Physiol & Ecol Cold & Arid Reg, Lanzhou, Gansu, Peoples R China
推荐引用方式 GB/T 7714	Genievskaya, Y.,Karelova, D.,Abugalieva, S.,et al. SSR-based evaluation of genetic diversity in populations of Agriophyllum squarrosum L. and Agriophyllum minus Fisch. & Mey. collected in South-East Kazakhstan[J]. 中国科学院西北生态环境资源研究院,2020,24(7):697-704.
APA	Genievskaya, Y.,Karelova, D.,Abugalieva, S.,Zhao, P.,Chen, G.,&Turuspekov, Y..(2020).SSR-based evaluation of genetic diversity in populations of Agriophyllum squarrosum L. and Agriophyllum minus Fisch. & Mey. collected in South-East Kazakhstan.VAVILOVSKII ZHURNAL GENETIKI I SELEKTSII,24(7),697-704.
MLA	Genievskaya, Y.,et al."SSR-based evaluation of genetic diversity in populations of Agriophyllum squarrosum L. and Agriophyllum minus Fisch. & Mey. collected in South-East Kazakhstan".VAVILOVSKII ZHURNAL GENETIKI I SELEKTSII 24.7(2020):697-704.