干旱区生态环境知识资源中心(Arid): To dry perchance to live: Insights from the genome of the desiccation-tolerant biocrust moss Syntrichia caninervis

Arid

DOI	10.1111/tpj.15116
	To dry perchance to live: Insights from the genome of the desiccation-tolerant biocrust moss Syntrichia caninervis
	Silva, Anderson T.; Gao, Bei; Fisher, Kirsten M.; Mishler, Brent D.; Ekwealor, Jenna T. B.; Stark, Lloyd R.; Li, Xiaoshuang; Zhang, Daoyuan; Bowker, Matthew A.; Brinda, John C.; Coe, Kirsten K.; Oliver, Melvin J.
通讯作者	Oliver, MJ (corresponding author), Univ Missouri, Div Plant Sci, Columbia, MO 65211 USA. ; Oliver, MJ (corresponding author), Univ Missouri, Interdisciplinary Plant Grp, Columbia, MO 65211 USA. ; Oliver, MJ (corresponding author), USDA ARS MWA, Plant Genet Res Unit, Columbia, MO 65211 USA.
来源期刊	PLANT JOURNAL
ISSN	0960-7412
EISSN	1365-313X
出版年	2021
卷号	105 期号:5 页码:1339-1356
英文摘要	With global climate change, water scarcity threatens whole agro/ecosystems. The desert moss Syntrichia caninervis, an extremophile, offers novel insights into surviving desiccation and heat. The sequenced S. caninervis genome consists of 13 chromosomes containing 16 545 protein-coding genes and 2666 unplaced scaffolds. Syntenic relationships within the S. caninervis and Physcomitrella patens genomes indicate the S. caninervis genome has undergone a single whole genome duplication event (compared to two for P. patens) and evidence suggests chromosomal or segmental losses in the evolutionary history of S. caninervis. The genome contains a large sex chromosome composed primarily of repetitive sequences with a large number of Copia and Gypsy elements. Orthogroup analyses revealed an expansion of ELIP genes encoding proteins important in photoprotection. The transcriptomic response to desiccation identified four structural clusters of novel genes. The genomic resources established for this extremophile offer new perspectives for understanding the evolution of desiccation tolerance in plants.
英文关键词	Syntrichia bryophyte genome desiccation tolerance abiotic stress comparative genomics transcriptomics
类型	Article
语种	英语
收录类别	SCI-E
WOS记录号	WOS:000600247600001
WOS关键词	TRANSCRIPTION FACTORS ; EXPRESSION ANALYSIS ; GENE PREDICTION ; PLANTS ; ANNOTATION ; BRYOPHYTES ; TRANSITION ; PROTEINS ; STRATEGY ; SURVIVAL
WOS类目	Plant Sciences
WOS研究方向	Plant Sciences
来源机构	中国科学院新疆生态与地理研究所 ; University of California, Berkeley
资源类型	期刊论文
条目标识符	http://119.78.100.177/qdio/handle/2XILL650/351333
作者单位	[Silva, Anderson T.; Oliver, Melvin J.] Univ Missouri, Div Plant Sci, Columbia, MO 65211 USA; [Silva, Anderson T.; Oliver, Melvin J.] Univ Missouri, Interdisciplinary Plant Grp, Columbia, MO 65211 USA; [Gao, Bei; Li, Xiaoshuang; Zhang, Daoyuan] Chinese Acad Sci, Xinjiang Inst Ecol & Geog, State Key Lab Desert & Oasis Ecol, Urumqi 830011, Peoples R China; [Fisher, Kirsten M.] Calif State Univ, Dept Biol Sci, Los Angeles, CA 90032 USA; [Mishler, Brent D.; Ekwealor, Jenna T. B.] Univ Calif Berkeley, Univ & Jepson Herbaria, Dept Integrat Biol, Berkeley, CA 94720 USA; [Stark, Lloyd R.] Univ Nevada, Sch Life Sci, Las Vegas, NV 89154 USA; [Bowker, Matthew A.] No Arizona Univ, Sch Forestry, Flagstaff, AZ 86011 USA; [Brinda, John C.] Missouri Bot Garden, St Louis, MO 63110 USA; [Coe, Kirsten K.] Middlebury Coll, Dept Biol, Middlebury, VT 40506 USA; [Oliver, Melvin J.] USDA ARS MWA, Plant Genet Res Unit, Columbia, MO 65211 USA
推荐引用方式 GB/T 7714	Silva, Anderson T.,Gao, Bei,Fisher, Kirsten M.,et al. To dry perchance to live: Insights from the genome of the desiccation-tolerant biocrust moss Syntrichia caninervis[J]. 中国科学院新疆生态与地理研究所, University of California, Berkeley,2021,105(5):1339-1356.
APA	Silva, Anderson T..,Gao, Bei.,Fisher, Kirsten M..,Mishler, Brent D..,Ekwealor, Jenna T. B..,...&Oliver, Melvin J..(2021).To dry perchance to live: Insights from the genome of the desiccation-tolerant biocrust moss Syntrichia caninervis.PLANT JOURNAL,105(5),1339-1356.
MLA	Silva, Anderson T.,et al."To dry perchance to live: Insights from the genome of the desiccation-tolerant biocrust moss Syntrichia caninervis".PLANT JOURNAL 105.5(2021):1339-1356.