干旱区生态环境知识资源中心(Arid): Nuclear phylogenomics, but not mitogenomics, resolves the most successful Late Miocene radiation of African mammals (Rodentia: Muridae: Arvicanthini)

Arid

DOI	10.1016/j.ympev.2021.107069
	Nuclear phylogenomics, but not mitogenomics, resolves the most successful Late Miocene radiation of African mammals (Rodentia: Muridae: Arvicanthini)
	Mikula, Ondrej; Nicolas, Violaine; Sumbera, Radim; Konecny, Adam; Denys, Christiane; Verheyen, Erik; Bryjova, Anna; Lemmon, Alan R.; Lemmon, Emily Moriarty; Bryja, Josef
通讯作者	Bryja, J (corresponding author), Czech Acad Sci, Res Facil Studenec, Inst Vertebrate Biol, Studenec 122, Konesin 67502, Czech Republic.
来源期刊	MOLECULAR PHYLOGENETICS AND EVOLUTION
ISSN	1055-7903
EISSN	1095-9513
出版年	2021
卷号	157
英文摘要	The tribe Arvicanthini (Muridae: Murinae) is a highly diversified group of rodents (ca. 100 species) and with 18 African genera (plus one Asiatic) represents probably the most successful adaptive radiation of extant mammals in Africa. They colonized a broad spectrum of habitats (from rainforests to semi-deserts) in whole sub-Saharan Africa and their members often belong to most abundant parts of mammal communities. Despite intensive efforts, the phylogenetic relationships among major lineages (i.e. genera) remained obscured, which was likely caused by the intensive radiation of the group, dated to the Late Miocene. Here we used genomic scale data (377 nuclear loci; 581,030 bp) and produced the first fully resolved species tree containing all currently delimited genera of the tribe. Mitogenomes were also extracted, and while the results were largely congruent, there was less resolution at basal nodes of the mitochondrial phylogeny. Results of a fossil-based divergence dating analysis suggest that the African radiation started early after the colonization of Africa by a single arvicanthine ancestor from Asia during the Messinian stage (ca. 7 Ma), and was likely linked with a fragmentation of the pan-African Miocene forest. Some lineages remained in the rain forest, while many others successfully colonized broad spectrum of new open habitats (e.g. savannas, wetlands or montane moorlands) that appeared at the beginning of Pliocene. One lineage even evolved partially arboricolous life style in savanna woodlands, which allowed them to re-colonize equatorial forests. We also discuss delimitation of genera in Arvicanthini and propose corresponding taxonomic changes.
英文关键词	Late Miocene Radiation Anchored phylogenomics Rodentia Tropical Africa Complete mitochondrial DNA
类型	Article
语种	英语
收录类别	SCI-E
WOS记录号	WOS:000618942200001
WOS类目	Biochemistry & Molecular Biology ; Evolutionary Biology ; Genetics & Heredity
WOS研究方向	Biochemistry & Molecular Biology ; Evolutionary Biology ; Genetics & Heredity
资源类型	期刊论文
条目标识符	http://119.78.100.177/qdio/handle/2XILL650/351161
作者单位	[Mikula, Ondrej; Bryjova, Anna; Bryja, Josef] Czech Acad Sci, Inst Vertebrate Biol, Brno 60365, Czech Republic; [Mikula, Ondrej] Czech Acad Sci, Inst Anim Physiol & Genet, Brno 60200, Czech Republic; [Nicolas, Violaine; Denys, Christiane] Sorbonne Univ, Univ Antilles, EPHE,CNRS, Inst Systemat Evolut Biodiversite ISYEB,Museum Na, CP51, F-75005 Paris, France; [Sumbera, Radim] Univ South Bohemia, Fac Sci, Dept Zool, Ceske Budejovice 37005, Czech Republic; [Konecny, Adam; Bryja, Josef] Masaryk Univ, Fac Sci, Dept Bot & Zool, Brno 61137, Czech Republic; [Verheyen, Erik] Royal Belgian Inst Nat Sci, Operat Direct Taxon & Phylogeny, B-1000 Brussels, Belgium; [Verheyen, Erik] Univ Antwerp, Biol Dept, Evolutionary Ecol Grp, B-2020 Antwerp, Belgium; [Lemmon, Alan R.] Florida State Univ, Dept Sci Comp, Dirac Sci Lib, Tallahassee, FL 32306 USA; [Lemmon, Emily Moriarty] Florida State Univ, Dept Biol Sci, 319 Stadium Dr,POB 3064295, Tallahassee, FL 32306 USA
推荐引用方式 GB/T 7714	Mikula, Ondrej,Nicolas, Violaine,Sumbera, Radim,et al. Nuclear phylogenomics, but not mitogenomics, resolves the most successful Late Miocene radiation of African mammals (Rodentia: Muridae: Arvicanthini)[J],2021,157.
APA	Mikula, Ondrej.,Nicolas, Violaine.,Sumbera, Radim.,Konecny, Adam.,Denys, Christiane.,...&Bryja, Josef.(2021).Nuclear phylogenomics, but not mitogenomics, resolves the most successful Late Miocene radiation of African mammals (Rodentia: Muridae: Arvicanthini).MOLECULAR PHYLOGENETICS AND EVOLUTION,157.
MLA	Mikula, Ondrej,et al."Nuclear phylogenomics, but not mitogenomics, resolves the most successful Late Miocene radiation of African mammals (Rodentia: Muridae: Arvicanthini)".MOLECULAR PHYLOGENETICS AND EVOLUTION 157(2021).