干旱区生态环境知识资源中心(Arid): Casting Light on the Adaptation Mechanisms and Evolutionary History of the Widespread Sumerlaeota

Arid

DOI	10.1128/mBio.00350-21
	Casting Light on the Adaptation Mechanisms and Evolutionary History of the Widespread Sumerlaeota
	Fang, Yun; Yuan, Yang; Liu, Jun; Wu, Geng; Yang, Jian; Hua, Zhengshuang; Han, Jibin; Zhang, Xiying; Li, Wenjun; Jiang, Hongchen
通讯作者	Wu, G ; Jiang, HC (corresponding author), China Univ Geosci, State Key Lab Biogeol & Environm Geol, Wuhan, Peoples R China. ; Jiang, HC (corresponding author), Chinese Acad Sci, Xinjiang Inst Ecol & Geog, State Key Lab Desert & Oasis Ecol, Urumqi, Peoples R China.
来源期刊	MBIO
ISSN	2150-7511
出版年	2021
卷号	12 期号:2
英文摘要	Sumerlaeota is a mysterious, putative phylum-level lineage distributed globally but rarely reported. As such, their physiology, ecology, and evolutionary history remain unknown. The 16S rRNA gene survey reveals that Sumerlaeota is frequently detected in diverse environments globally, especially cold arid desert soils and deep-sea basin surface sediments, where it is one dominant microbial group. Here, we retrieved four Sumerlaeota metagenomeassembled genomes (MAGs) from two hot springs and one saline lake. Including another 12 publicly available MAGs, they represent six of the nine putative Sumerlaeota subgroups/orders, as indicated by 16S rRNA gene-based phylogeny. These elusive organisms likely obtain carbon mainly through utilization of refractory organics (e.g., chitin and cellulose) and proteinaceous compounds, suggesting that Sumerlaeota act as scavengers in nature. The presence of key bidirectional enzymes involved in acetate and hydrogen metabolisms in these MAGs suggests that they are acetogenic bacteria capable of both the production and consumption of hydrogen. The capabilities of dissimilatory nitrate and sulfate reduction, nitrogen fixation, phosphate solubilization, and organic phosphorus mineralization may confer these heterotrophs great advantages to thrive under diverse harsh conditions. Ancestral state reconstruction indicated that Sumerlaeota originated from chemotrophic and facultatively anaerobic ancestors, and their smaller and variably sized genomes evolved along dynamic pathways from a sizeable common ancestor (2,342 genes), leading to their physiological divergence. Notably, large gene gain and larger loss events occurred at the branch to the last common ancestor of the order subgroup 1, likely due to niche expansion and population size effects. IMPORTANCE In recent years, the tree of life has expanded substantially. Despite this, many abundant yet uncultivated microbial groups remain to be explored. The candidate phylum Sumerlaeota is widely distributed in various harsh environments. However, their physiology, adaptation mechanisms, and evolution remain elusive due to a lack of pure cultures and limited available genomes. Here, we used genomes from uncultivated members of Sumerlaeota to disclose why these taxa can thrive under diverse harsh conditions and how they evolved from a chemotrophic and facultatively anaerobic common ancestor. This study deeply explored the biology of Sumerlaeota and provided novel insights into their possible roles in global biogeochemical cycles, adaptation mechanisms, ecological significance, and evolutionary history.
英文关键词	ancestral state reconstruction adaptation mechanisms harsh environments refractory organic compounds Sumerlaeota
类型	Article
语种	英语
开放获取类型	gold, Green Published
收录类别	SCI-E
WOS记录号	WOS:000643685500007
WOS关键词	MULTIPLE SEQUENCE ALIGNMENT ; MICROBIAL DIVERSITY ; ENERGY-SOURCE ; ALGORITHM ; INSIGHTS ; TREE ; TOOL ; MICROORGANISMS ; METAGENOMICS ; HYDROGENASE
WOS类目	Microbiology
WOS研究方向	Microbiology
来源机构	中国科学院新疆生态与地理研究所
资源类型	期刊论文
条目标识符	http://119.78.100.177/qdio/handle/2XILL650/351124
作者单位	[Fang, Yun; Wu, Geng; Yang, Jian; Jiang, Hongchen] China Univ Geosci, State Key Lab Biogeol & Environm Geol, Wuhan, Peoples R China; [Fang, Yun; Li, Wenjun; Jiang, Hongchen] Chinese Acad Sci, Xinjiang Inst Ecol & Geog, State Key Lab Desert & Oasis Ecol, Urumqi, Peoples R China; [Yuan, Yang; Liu, Jun; Li, Wenjun] Sun Yat Sen Univ, Sch Life Sci, Guangdong Prov Key Lab Plant Resources, State Key Lab Biocontrol, Guangzhou, Peoples R China; [Yuan, Yang; Liu, Jun; Li, Wenjun] Sun Yat Sen Univ, Sch Life Sci, Southern Marine Sci & Engn Guangdong Lab Zhuhai, Guangzhou, Peoples R China; [Hua, Zhengshuang] Dartmouth Coll, Dept Biol Sci, Hanover, NH 03755 USA; [Han, Jibin; Zhang, Xiying] Chinese Acad Sci, Qinghai Inst Salt Lakes, Northwest Inst Ecoenvironm & Resources, Key Lab Salt Lake Geol & Environm Qinghai Prov, Xining, Peoples R China
推荐引用方式 GB/T 7714	Fang, Yun,Yuan, Yang,Liu, Jun,et al. Casting Light on the Adaptation Mechanisms and Evolutionary History of the Widespread Sumerlaeota[J]. 中国科学院新疆生态与地理研究所,2021,12(2).
APA	Fang, Yun.,Yuan, Yang.,Liu, Jun.,Wu, Geng.,Yang, Jian.,...&Jiang, Hongchen.(2021).Casting Light on the Adaptation Mechanisms and Evolutionary History of the Widespread Sumerlaeota.MBIO,12(2).
MLA	Fang, Yun,et al."Casting Light on the Adaptation Mechanisms and Evolutionary History of the Widespread Sumerlaeota".MBIO 12.2(2021).