干旱区生态环境知识资源中心(Arid): Genome assembly and annotation of the California harvester ant Pogonomyrmex californicus

Arid

DOI	10.1093/g3journal/jkaa019
	Genome assembly and annotation of the California harvester ant Pogonomyrmex californicus
	Bohn, Jonas; Halabian, Reza; Schrader, Lukas; Shabardina, Victoria; Steffen, Raphael; Suzuki, Yutaka; Ernst, Ulrich R.; Gadau, Juergen; Makalowski, Wojciech
通讯作者	Makalowski, W (corresponding author), Univ Munster, Fac Med, Inst Bioinformat, D-48149 Munster, Germany. ; Gadau, J (corresponding author), Univ Munster, Fac Biol, Inst Evolut & Biodivers, D-48149 Munster, Germany.
来源期刊	G3-GENES GENOMES GENETICS
ISSN	2160-1836
出版年	2021
卷号	11 期号:1
英文摘要	The harvester ant genus Pogonomyrmex is endemic to arid and semiarid habitats and deserts of North and South America. The California harvester ant Pogonomyrmex californicus is the most widely distributed Pogonomyrmex species in North America. Pogonomyrmex californicus colonies are usually monogynous, i.e. a colony has one queen. However, in a few populations in California, primary polygyny evolved, i.e. several queens cooperate in colony founding after their mating flights and continue to coexist in mature colonies. Here, we present a genome assembly and annotation of P. californicus. The size of the assembly is 241Mb, which is in agreement with the previously estimated genome size. We were able to annotate 17,889 genes in total, including 15,688 protein-coding ones with BUSCO (Benchmarking Universal Single-Copy Orthologs) completeness at a 95% level. The presented P. californicus genome assembly will pave the way for investigations of the genomic underpinnings of social polymorphism in the number of queens, regulation of aggression, and the evolution of adaptations to dry habitats.
英文关键词	genome assembly genome annotation Nanopore sequencing polygyny social insect Hymenoptera
类型	Article
语种	英语
开放获取类型	Green Submitted, gold, Green Published
收录类别	SCI-E
WOS记录号	WOS:000651851700010
WOS关键词	RNA-SEQ DATA ; GENE PREDICTION ; TRANSCRIPTOME ; SELECTION ; TOOL ; HYMENOPTERA ; ALIGNMENTS ; MECHANISMS ; DYNAMICS ; DATABASE
WOS类目	Genetics & Heredity
WOS研究方向	Genetics & Heredity
资源类型	期刊论文
条目标识符	http://119.78.100.177/qdio/handle/2XILL650/350351
作者单位	[Bohn, Jonas; Halabian, Reza; Shabardina, Victoria; Makalowski, Wojciech] Univ Munster, Fac Med, Inst Bioinformat, D-48149 Munster, Germany; [Schrader, Lukas; Steffen, Raphael; Ernst, Ulrich R.; Gadau, Juergen] Univ Munster, Fac Biol, Inst Evolut & Biodivers, D-48149 Munster, Germany; [Suzuki, Yutaka] Univ Tokyo, Grad Sch Frontier Sci, Dept Computat Biol & Med Sci, Chiba 2778562, Japan; [Bohn, Jonas] Deutsch Krebsforschungszentrum DKFZ, Div Med Informat Translat Oncol, Neuenheimer Feld 280, D-69120 Heidelberg, Germany; [Shabardina, Victoria] Univ Pompeu Fabra, Inst Evolutionary Biol, CSIC, Maritim de la Barceloneta 39, Barcelona 08003, Spain
推荐引用方式 GB/T 7714	Bohn, Jonas,Halabian, Reza,Schrader, Lukas,et al. Genome assembly and annotation of the California harvester ant Pogonomyrmex californicus[J],2021,11(1).
APA	Bohn, Jonas.,Halabian, Reza.,Schrader, Lukas.,Shabardina, Victoria.,Steffen, Raphael.,...&Makalowski, Wojciech.(2021).Genome assembly and annotation of the California harvester ant Pogonomyrmex californicus.G3-GENES GENOMES GENETICS,11(1).
MLA	Bohn, Jonas,et al."Genome assembly and annotation of the California harvester ant Pogonomyrmex californicus".G3-GENES GENOMES GENETICS 11.1(2021).