Knowledge Resource Center for Ecological Environment in Arid Area
DOI | 10.3897/zookeys.1012.59035 |
Complete mitochondrial genome sequence of Lepus yarkandensis Gunther, 1875 (Lagomorpha, Leporidae): characterization and phylogenetic analysis | |
Shan, Wenjuan; Tursun, Mayinur; Zhou, Shiyu; Zhang, Yucong; Dai, Huiying | |
通讯作者 | Shan, WJ (corresponding author), Xinjiang Univ, Coll Life Sci & Technol, Xinjiang Key Lab Biol Resources & Genet Engn, Urumqi 830046, Peoples R China. |
来源期刊 | ZOOKEYS |
ISSN | 1313-2989 |
EISSN | 1313-2970 |
出版年 | 2021 |
期号 | 1012页码:135-149 |
英文摘要 | Lepus yarkandensis is a national second-class protected animal endemic to China and distributed only in the hot and arid Tarim Basin in Xinjiang. We sequenced and described the complete mitogenome of L. yarkandensis to analyze its characteristics and phylogeny. The species' DNA is a 17,047 bp circular molecule that includes 13 protein-coding genes (PCGs), two rRNA genes, 22 tRNA genes, and one control region. The overall base composition was as follows: A, 31.50%; T, 29.40%; G, 13.30% and C, 25.80%, with a high A+T bias of 60.9%. In the PCGs, ND6 had deviation ranges for AT skew (-0.303) and GC skew (0.636). The Ka/Ks values of ND1 (1.067) and ND6 (1.352) genes were >1, indicating positive selection, which might play an important role in the adaptation of L. yarkandensis to arid and hot environments. The conserved sequence block, the central conserved domain, and the extended termination-associated sequences of the control region and their features were identified and described. The phylogenetic tree based on the complete mitogenome showed that L. yarkandensis was closely related to the sympatric Lepus tibetanus pamirensis. These novel datasets of L. yarkandensis can supply basic data for phylogenetic studies of Lepus spp., apart from providing essential and important resource for further genetic research and the protection of this species. |
英文关键词 | mitogenome molecular phylogeny synonymous/non-synonymous substitution Yarkand hare |
类型 | Article |
语种 | 英语 |
开放获取类型 | gold, Green Published |
收录类别 | SCI-E |
WOS记录号 | WOS:000613552900006 |
WOS关键词 | CONTROL REGION ; DNA-SEQUENCE ; EVOLUTION ; PATTERNS ; GENES ; TOLAI ; MODEL |
WOS类目 | Zoology |
WOS研究方向 | Zoology |
来源机构 | 新疆大学 |
资源类型 | 期刊论文 |
条目标识符 | http://119.78.100.177/qdio/handle/2XILL650/348280 |
作者单位 | [Shan, Wenjuan; Tursun, Mayinur; Zhou, Shiyu; Zhang, Yucong; Dai, Huiying] Xinjiang Univ, Coll Life Sci & Technol, Xinjiang Key Lab Biol Resources & Genet Engn, Urumqi 830046, Peoples R China |
推荐引用方式 GB/T 7714 | Shan, Wenjuan,Tursun, Mayinur,Zhou, Shiyu,et al. Complete mitochondrial genome sequence of Lepus yarkandensis Gunther, 1875 (Lagomorpha, Leporidae): characterization and phylogenetic analysis[J]. 新疆大学,2021(1012):135-149. |
APA | Shan, Wenjuan,Tursun, Mayinur,Zhou, Shiyu,Zhang, Yucong,&Dai, Huiying.(2021).Complete mitochondrial genome sequence of Lepus yarkandensis Gunther, 1875 (Lagomorpha, Leporidae): characterization and phylogenetic analysis.ZOOKEYS(1012),135-149. |
MLA | Shan, Wenjuan,et al."Complete mitochondrial genome sequence of Lepus yarkandensis Gunther, 1875 (Lagomorpha, Leporidae): characterization and phylogenetic analysis".ZOOKEYS .1012(2021):135-149. |
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