干旱区生态环境知识资源中心(Arid): Complete mitochondrial genome sequence of Lepus yarkandensis Gunther, 1875 (Lagomorpha, Leporidae): characterization and phylogenetic analysis

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DOI	10.3897/zookeys.1012.59035
	Complete mitochondrial genome sequence of Lepus yarkandensis Gunther, 1875 (Lagomorpha, Leporidae): characterization and phylogenetic analysis
	Shan, Wenjuan; Tursun, Mayinur; Zhou, Shiyu; Zhang, Yucong; Dai, Huiying
通讯作者	Shan, WJ (corresponding author), Xinjiang Univ, Coll Life Sci & Technol, Xinjiang Key Lab Biol Resources & Genet Engn, Urumqi 830046, Peoples R China.
来源期刊	ZOOKEYS
ISSN	1313-2989
EISSN	1313-2970
出版年	2021
期号	1012 页码:135-149
英文摘要	Lepus yarkandensis is a national second-class protected animal endemic to China and distributed only in the hot and arid Tarim Basin in Xinjiang. We sequenced and described the complete mitogenome of L. yarkandensis to analyze its characteristics and phylogeny. The species' DNA is a 17,047 bp circular molecule that includes 13 protein-coding genes (PCGs), two rRNA genes, 22 tRNA genes, and one control region. The overall base composition was as follows: A, 31.50%; T, 29.40%; G, 13.30% and C, 25.80%, with a high A+T bias of 60.9%. In the PCGs, ND6 had deviation ranges for AT skew (-0.303) and GC skew (0.636). The Ka/Ks values of ND1 (1.067) and ND6 (1.352) genes were >1, indicating positive selection, which might play an important role in the adaptation of L. yarkandensis to arid and hot environments. The conserved sequence block, the central conserved domain, and the extended termination-associated sequences of the control region and their features were identified and described. The phylogenetic tree based on the complete mitogenome showed that L. yarkandensis was closely related to the sympatric Lepus tibetanus pamirensis. These novel datasets of L. yarkandensis can supply basic data for phylogenetic studies of Lepus spp., apart from providing essential and important resource for further genetic research and the protection of this species.
英文关键词	mitogenome molecular phylogeny synonymous/non-synonymous substitution Yarkand hare
类型	Article
语种	英语
开放获取类型	gold, Green Published
收录类别	SCI-E
WOS记录号	WOS:000613552900006
WOS关键词	CONTROL REGION ; DNA-SEQUENCE ; EVOLUTION ; PATTERNS ; GENES ; TOLAI ; MODEL
WOS类目	Zoology
WOS研究方向	Zoology
来源机构	新疆大学
资源类型	期刊论文
条目标识符	http://119.78.100.177/qdio/handle/2XILL650/348280
作者单位	[Shan, Wenjuan; Tursun, Mayinur; Zhou, Shiyu; Zhang, Yucong; Dai, Huiying] Xinjiang Univ, Coll Life Sci & Technol, Xinjiang Key Lab Biol Resources & Genet Engn, Urumqi 830046, Peoples R China
推荐引用方式 GB/T 7714	Shan, Wenjuan,Tursun, Mayinur,Zhou, Shiyu,et al. Complete mitochondrial genome sequence of Lepus yarkandensis Gunther, 1875 (Lagomorpha, Leporidae): characterization and phylogenetic analysis[J]. 新疆大学,2021(1012):135-149.
APA	Shan, Wenjuan,Tursun, Mayinur,Zhou, Shiyu,Zhang, Yucong,&Dai, Huiying.(2021).Complete mitochondrial genome sequence of Lepus yarkandensis Gunther, 1875 (Lagomorpha, Leporidae): characterization and phylogenetic analysis.ZOOKEYS(1012),135-149.
MLA	Shan, Wenjuan,et al."Complete mitochondrial genome sequence of Lepus yarkandensis Gunther, 1875 (Lagomorpha, Leporidae): characterization and phylogenetic analysis".ZOOKEYS .1012(2021):135-149.