干旱区生态环境知识资源中心(Arid): Comparative Transcriptome of Transcription Factors in Rhazya Stricta and Some Other Desert Plants

Arid

	Comparative Transcriptome of Transcription Factors in Rhazya Stricta and Some Other Desert Plants
	Noor, Samah O.; Al-Zahrani, Dhafer A.; Hussein, Refaei M.; Baeshen, Mohammed N.; Moussa, Tarek A. A.; Baeshen, Nabih A.; Huelsenbeck, John P.
通讯作者	Noor, SO
来源期刊	ENTOMOLOGY AND APPLIED SCIENCE LETTERS
ISSN	2349-2864
出版年	2020
卷号	7 期号:4 页码:42-57
英文摘要	The transcription factors families (TFs) play a critical role in the response regulation of plants to abiotic stresses. The three plant lineages (E. desvauxii, C. colocynthis & Z. simplex) can be separated on the PC1 level, while R. stricta and S. Italica can be distinguished from each other on the PC2 level. A unique 225 transcripts in each of R. stricta and E. desvauxii, 85 transcripts in C. colocynthis, 92 transcripts in S. Italica, and 41 transcripts in Z. simplex were identified. All five plants were shared in only 15 transcripts. Genes had significant gene ontology (GO), R. stricta (450), E. desvauxii (475), C. colocynthis (197), S. Italica (223), and Z. simplex (75) were significantly assigned with GO terms for 29 transcriptional processes. The most abundant TF families in the five plants were MYB followed by, MYB-related, bHLH, and AP2-EREBP (1105, 803, 53 & 472 transcripts, respectively). The zinc TF families were the most transcribed and represented by 8 TF families (PLATZ, C2C2-CO-like, C3H, VOZ, C2C2-GATA, C2C2-DOF, C2H2 & ZF-HD), with the highest one (C3H TF family, 99 transcripts in both R. stricta & Z. simplex). The regulatory network showed that as heat response, 12 genes were upregulated in R. stricta and controlled several genes in some vital processes inside the plant, while E. desvauxii and S. Italica respond to heat by upregulation of 6 genes for each, C. colocynthis by regulation of 3 genes and the least one was Z. simplex by upregulation of two genes only.
英文关键词	Transcription factors Desert plants Heat response Salt response RNA sequencing
类型	Article
语种	英语
收录类别	ESCI
WOS记录号	WOS:000595882200006
WOS关键词	SALT TOLERANCE ; GENE-EXPRESSION ; STRESS-RESPONSE ; DROUGHT ; ARABIDOPSIS ; MECHANISMS ; PATHWAYS ; PHOTOSYNTHESIS ; COMPONENT ; PROTEIN
WOS类目	Entomology
WOS研究方向	Entomology
来源机构	University of California, Berkeley
资源类型	期刊论文
条目标识符	http://119.78.100.177/qdio/handle/2XILL650/334791
作者单位	[Noor, Samah O.; Al-Zahrani, Dhafer A.; Baeshen, Nabih A.] King Abdulaziz Univ, Fac Sci, Dept Biol Sci, Jeddah, Saudi Arabia; [Hussein, Refaei M.] Univ Jeddah, Fac Sci & Arts, Dept Biol Sci, Jeddah, Al Kamel Provin, Saudi Arabia; [Hussein, Refaei M.] Natl Res Ctr, Genet Engn Div, Genet & Cytol Dept, Cairo, Egypt; [Baeshen, Mohammed N.; Moussa, Tarek A. A.] Univ Jeddah, Fac Sci, Dept Biol Sci, Jeddah, Saudi Arabia; [Moussa, Tarek A. A.] Cairo Univ, Fac Sci, Bot & Microbiol Dept, Giza 12613, Egypt; [Huelsenbeck, John P.] Univ Calif Berkeley, Dept Integrat Biol, Berkeley, CA 94720 USA
推荐引用方式 GB/T 7714	Noor, Samah O.,Al-Zahrani, Dhafer A.,Hussein, Refaei M.,et al. Comparative Transcriptome of Transcription Factors in Rhazya Stricta and Some Other Desert Plants[J]. University of California, Berkeley,2020,7(4):42-57.
APA	Noor, Samah O..,Al-Zahrani, Dhafer A..,Hussein, Refaei M..,Baeshen, Mohammed N..,Moussa, Tarek A. A..,...&Huelsenbeck, John P..(2020).Comparative Transcriptome of Transcription Factors in Rhazya Stricta and Some Other Desert Plants.ENTOMOLOGY AND APPLIED SCIENCE LETTERS,7(4),42-57.
MLA	Noor, Samah O.,et al."Comparative Transcriptome of Transcription Factors in Rhazya Stricta and Some Other Desert Plants".ENTOMOLOGY AND APPLIED SCIENCE LETTERS 7.4(2020):42-57.