干旱区生态环境知识资源中心(Arid): Identification and annotation of abiotic stress responsive candidate genes in peanut ESTs

Arid

DOI	10.6026/97320630081211
	Identification and annotation of abiotic stress responsive candidate genes in peanut ESTs
	Kumari, Archana; Kumar, Ashutosh; Wany, Aakanksha; Prajapati, Gopal Kumar; Pandey, Dev Mani
通讯作者	Pandey, DM
来源期刊	BIOINFORMATION
ISSN	0973-8894
EISSN	0973-2063
出版年	2012
卷号	8 期号:24 页码:1211-1219
英文摘要	Peanut (Arachis hypogaea L.) ranks fifth among the world oil crops and is widely grown in India and neighbouring countries. Due to its large and unknown genome size, studies on genomics and genetic modification of peanut are still scanty as compared to other model crops like Arabidopsis, rice, cotton and soybean. Because of its favourable cultivation in semi-arid regions, study on abiotic stress responsive genes and its regulation in peanut is very much important. Therefore, we aim to identify and annotate the abiotic stress responsive candidate genes in peanut ESTs. Expression data of drought stress responsive corresponding genes and EST sequences were screened from dot blot experiments shown as heat maps and supplementary tables, respectively as reported by Govind et al. (2009). Some of the screened genes having no information about their ESTs in above mentioned supplementary tables were retrieved from NCBI. A phylogenetic analysis was performed to find a group of utmost similar ESTs for each selected gene. Individual EST of the said group were further searched in peanut ESTs (1,78,490 whole EST sequences) using stand alone BLAST. For the prediction as well as annotation of abiotic stress responsive selected genes, various tools (like Vec-Screen, Repeat Masker, EST-Trimmer, DNA Baser, WISE2 and I-TASSER) were used. Here we report the predicted result of Contigs, domain as well as 3D structure for HSP 17.3KDa protein, DnaJ protein and Type 2 Metallothionein protein.
英文关键词	Arachis hypogaea EST Gene annotation Stress Contigs
类型	Article
语种	英语
开放获取类型	Green Published, Other Gold
收录类别	ESCI
WOS记录号	WOS:000449435700006
WOS关键词	EXPRESSED SEQUENCE TAGS ; HEAT-SHOCK PROTEINS ; GENERATION ; DISCOVERY ; GENOMICS ; PLANTS
WOS类目	Mathematical & Computational Biology
WOS研究方向	Mathematical & Computational Biology
资源类型	期刊论文
条目标识符	http://119.78.100.177/qdio/handle/2XILL650/330236
作者单位	[Kumari, Archana; Kumar, Ashutosh; Wany, Aakanksha; Prajapati, Gopal Kumar; Pandey, Dev Mani] Birla Inst Technol, Dept Biotechnol, Ranchi 835215, Jharkhand, India
推荐引用方式 GB/T 7714	Kumari, Archana,Kumar, Ashutosh,Wany, Aakanksha,et al. Identification and annotation of abiotic stress responsive candidate genes in peanut ESTs[J],2012,8(24):1211-1219.
APA	Kumari, Archana,Kumar, Ashutosh,Wany, Aakanksha,Prajapati, Gopal Kumar,&Pandey, Dev Mani.(2012).Identification and annotation of abiotic stress responsive candidate genes in peanut ESTs.BIOINFORMATION,8(24),1211-1219.
MLA	Kumari, Archana,et al."Identification and annotation of abiotic stress responsive candidate genes in peanut ESTs".BIOINFORMATION 8.24(2012):1211-1219.