干旱区生态环境知识资源中心(Arid): Maternal origin and genetic diversity of Algerian domestic chicken (Gallus gallus domesticus) from North-Western Africa based on mitochondrial DNA analysis

Arid

DOI	10.1080/10495398.2020.1803892
	Maternal origin and genetic diversity of Algerian domestic chicken (Gallus gallus domesticus) from North-Western Africa based on mitochondrial DNA analysis
	Boudali, Selma Farah; Al-Jumaili, Ahmed S.; Bouandas, Ameur; Mahammi, Fatima Zohra; Aoul, Nacera Tabet; Hanotte, Olivier; Gaouar, Semir Bechir Suheil
通讯作者	Boudali, SF
来源期刊	ANIMAL BIOTECHNOLOGY
ISSN	1049-5398
EISSN	1532-2378
英文摘要	Local chicken populations are a major source of food in the rural areas of Algeria. However, their origin has not been well characterized. The objectives of this study were to assess genetic diversity and maternal origin of domestic chicken from five agro-ecological regions of western Algeria: coastal (CT), inland plains (IP), highlands (HL), mountains (MT) and sahara (SH, including Oasis, Req and Erg regions). A set of 88 mitochondrial DNA (mtDNA) D-loop sequences including the hypervariable region I (HV1) were analyzed. From the 397 bp D-loop sequence, 20 variable sites that defined 13 haplotypes were identified in Algerian domestic chicken. The haplotype and nucleotide diversity were estimated as 0.597 and 0.003, respectively. Phylogenetic and network analyses indicated the presence of two clades or haplogroups (A and E). Only one clade A haplotype was observed exclusively in the population of mountains, while, Clade E haplotypes were found in almost all Algerian chicken with twelve different haplotypes. These findings suggest that Algerian chickens derived from the most ubiquitous haplogroup which have its root in the Indian subcontinent. Our results provide important information about the origin of the North-West African chicken and the historical dispersal of the first chicken populations into African continent.
英文关键词	Algeria D-loop domestic chicken haplogroup maternal origin Mitochondrial DNA
类型	Article ; Early Access
语种	英语
收录类别	SCI-E
WOS记录号	WOS:000558973500001
WOS关键词	NATIVE CHICKENS ; LOCAL CHICKENS ; SEQUENCE ; MICROSATELLITES ; POLYMORPHISM ; DISPERSAL ; PATTERNS
WOS类目	Agriculture, Dairy & Animal Science ; Biotechnology & Applied Microbiology
WOS研究方向	Agriculture ; Biotechnology & Applied Microbiology
资源类型	期刊论文
条目标识符	http://119.78.100.177/qdio/handle/2XILL650/328149
作者单位	[Boudali, Selma Farah; Mahammi, Fatima Zohra; Aoul, Nacera Tabet; Gaouar, Semir Bechir Suheil] Univ Sci & Technol Oran Mohamed Boudiaf, Lab Genet Mol & Cellulaire LGMC, USTO MB, BP 1505, El Mnaouer 31000, Oran, Algeria; [Al-Jumaili, Ahmed S.; Hanotte, Olivier] Univ Nottingham, Sch Life Sci, Univ Pk, Nottingham, England; [Bouandas, Ameur; Gaouar, Semir Bechir Suheil] Univ Tlemcen, Physiopathol & Biochem Nutr PpBioNut, Tilimsen, Algeria; [Mahammi, Fatima Zohra] Ecole Super Sci Biol Oran ESSBO, BP 1042, Saim Mohamed, Oran, Algeria; [Aoul, Nacera Tabet] Univ Oran1 Ahmed Benbella, Dept Biotechnol, Oran, Algeria
推荐引用方式 GB/T 7714	Boudali, Selma Farah,Al-Jumaili, Ahmed S.,Bouandas, Ameur,et al. Maternal origin and genetic diversity of Algerian domestic chicken (Gallus gallus domesticus) from North-Western Africa based on mitochondrial DNA analysis[J].
APA	Boudali, Selma Farah.,Al-Jumaili, Ahmed S..,Bouandas, Ameur.,Mahammi, Fatima Zohra.,Aoul, Nacera Tabet.,...&Gaouar, Semir Bechir Suheil.
MLA	Boudali, Selma Farah,et al."Maternal origin and genetic diversity of Algerian domestic chicken (Gallus gallus domesticus) from North-Western Africa based on mitochondrial DNA analysis".ANIMAL BIOTECHNOLOGY