干旱区生态环境知识资源中心(Arid): Streptomyces harenosi sp. nov., a home for a gifted strain isolated from Indonesian sand dune soil

Arid

DOI	10.1099/ijsem.0.004346
	Streptomyces harenosi sp. nov., a home for a gifted strain isolated from Indonesian sand dune soil
	Kusuma, Ali Budhi; Nouioui, Imen; Klenk, Hans-Peter; Goodfellow, Michael
通讯作者	Goodfellow, M
来源期刊	INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY
ISSN	1466-5026
EISSN	1466-5034
出版年	2020
卷号	70 期号:9 页码:4874-4882
英文摘要	A polyphasic study was undertaken to establish the position of a Streptomyces strain, isolate PRKS01-65(T), recovered from sand dune soil collected at Parangkusumo, Yogyakarta Province, Java, Indonesia. A combination of chemotaxonomic, cultural and morphological properties confirmed its position in the genus of Streptomyces. Comparative 16S rRNA gene sequence analyses showed that the isolate was most closely related to Streptomyces leeuwenhoekii C34(T) (99.9% similarity) and loosely associated with the type strains of Streptomyces chiangmaiensis (98.7% similarity) and Streptomyces glomeratus (98.9% similarity). Multilocus sequence analyses based on five conserved housekeeping gene alleles confirmed the close relationship between the isolate and S. leeuwenhoekii C34(T), although both strains belonged to a well-supported Glade that encompassed the type strains of S. glomeratus, Streptomyces griseomycini, Streptomyces griseostramineus, Streptomyces labedae, Streptomyces lomondensis and Streptomyces spinoverrucosus. A comparison of the draft genome sequence generated for the isolate with corresponding whole genome sequences of its closest phylogenomic neighbours showed that it formed a well-separated lineage with S. leeuwenhoekii C34(T). These strains can also be distinguished using a combination of phenotypic properties and by average nucleotide identity and digital DNA-DNA hybridization similarities of 94.3 and 56%, values consistent with their classification in different species. Based on this wealth of data it is proposed that isolate PRKS01-65(T) (=NCIMB 15211(T)=CCMM B1302(T)=ICEBB-03(T)) be classified as Streptomyces harenosi sp. nov. The genome of the isolate contains several biosynthetic gene clusters with the potential to produce new natural products.
英文关键词	Streptomyces harenosisp. nov arid sandy soil polyphasic taxonomy genomics
类型	Article
语种	英语
开放获取类型	Green Published
收录类别	SCI-E
WOS记录号	WOS:000577279800006
WOS关键词	MULTILOCUS SEQUENCE-ANALYSIS ; ATACAMA DESERT ; EMENDED DESCRIPTION ; GENOME SEQUENCE ; CLASSIFICATION ; ACTINOMYCETE ; SYSTEMATICS ; DIVERSITY ; ALGORITHM ; NOMENCLATURE
WOS类目	Microbiology
WOS研究方向	Microbiology
资源类型	期刊论文
条目标识符	http://119.78.100.177/qdio/handle/2XILL650/326757
作者单位	[Kusuma, Ali Budhi; Nouioui, Imen; Klenk, Hans-Peter; Goodfellow, Michael] Newcastle Univ, Sch Nat & Environm Sci, Ridley Bldg 2, Newcastle Upon Tyne NE1 7RU, Tyne & Wear, England; [Kusuma, Ali Budhi] Sumbawa Univ Technol, Fac Biotechnol, Indonesian Ctr Extremophile Bioresources & Biotec, Sumbawa Besar 84371, Indonesia; [Nouioui, Imen] German Collect Microorganisms & Cell Cultures, Leibniz Inst DSMZ, Inhoffenstr 7B, D-38124 Braunschweig, Germany
推荐引用方式 GB/T 7714	Kusuma, Ali Budhi,Nouioui, Imen,Klenk, Hans-Peter,et al. Streptomyces harenosi sp. nov., a home for a gifted strain isolated from Indonesian sand dune soil[J],2020,70(9):4874-4882.
APA	Kusuma, Ali Budhi,Nouioui, Imen,Klenk, Hans-Peter,&Goodfellow, Michael.(2020).Streptomyces harenosi sp. nov., a home for a gifted strain isolated from Indonesian sand dune soil.INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY,70(9),4874-4882.
MLA	Kusuma, Ali Budhi,et al."Streptomyces harenosi sp. nov., a home for a gifted strain isolated from Indonesian sand dune soil".INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY 70.9(2020):4874-4882.