干旱区生态环境知识资源中心(Arid): Chromosome-level genome assembly of Tarim red deer, Cervus elaphus yarkandensis

Arid

DOI	10.1038/s41597-020-0537-0
	Chromosome-level genome assembly of Tarim red deer, Cervus elaphus yarkandensis
	Ba, Hengxing 1; Cai, Zexi 3; Gao, Haoyang 4; Qin, Tao 1; Liu, Wenyuan 1; Xie, Liuwei 1; Zhang, Yaolei 4; Jing, Binyu 5; Wang, Datao 1; Li, Chunyi 1,2
通讯作者	Ba, Hengxing ; Wang, Datao ; Li, Chunyi
来源期刊	SCIENTIFIC DATA
EISSN	2052-4463
出版年	2020
卷号	7 期号:1
英文摘要	Tarim red deer (Cervus elaphus yarkandensis) is the only subspecies of red deer (of 22 subspecies) from Central Asia. This species is a desert dweller of the Tarim Basin of southern Xinjiang, China, and exhibits some unique adaptations to the dry and extreme hot climate. We report here the assembly of a Tarim red deer genome employing a 10X Genomics library, termed CEY_v1. Our genome consisted of 2.6Gb with contig N50 and scaffold N50 of 275.5 Kb and 31.7Mb, respectively. Around 96% of the assembled sequences were anchored onto 34 chromosomes based on the published high-quality red deer genetic linkage map. More than 94% BUSCOs complete genes (including 90.5% single and 3.6% duplicated ones) were detected in the CEY_v1 and 20,653 genes were annotated. The CEY_v1 is expected to contribute to comparative analysis of genome biology, to evolutionary studies within Cervidae, and to facilitating investigation of mechanisms underlying adaptation of this species to the extreme dry and hot climate.
类型	Article ; Data Paper
语种	英语
国家	Peoples R China ; Denmark
开放获取类型	Green Published, gold
收录类别	SCI-E
WOS记录号	WOS:000546946600004
WOS关键词	PHYLOGEOGRAPHY ; POPULATION ; PREDICTION ; INSIGHTS ; XINJIANG ; HYBRID ; FINDER ; GENE
WOS类目	Multidisciplinary Sciences
WOS研究方向	Science & Technology - Other Topics
资源类型	期刊论文
条目标识符	http://119.78.100.177/qdio/handle/2XILL650/319779
作者单位	1.Chinese Acad Agr Sci, Inst Special Wild Econ Anim & Plants, Changchun 130112, Peoples R China; 2.Changchun Sci Tech Univ, Changchun 130600, Peoples R China; 3.Aarhus Univ, Dept Mol Biol & Genet, Ctr Quantitat Genet & Genom, DK-8830 Tjele, Denmark; 4.BGI Qingdao, BGI Shenzhen, Qingdao 266032, Shandong, Peoples R China; 5.Xinjiang Co Ltd Houshi Biol Sci & Technol, Urumqi 830002, Peoples R China
推荐引用方式 GB/T 7714	Ba, Hengxing,Cai, Zexi,Gao, Haoyang,et al. Chromosome-level genome assembly of Tarim red deer, Cervus elaphus yarkandensis[J],2020,7(1).
APA	Ba, Hengxing.,Cai, Zexi.,Gao, Haoyang.,Qin, Tao.,Liu, Wenyuan.,...&Li, Chunyi.(2020).Chromosome-level genome assembly of Tarim red deer, Cervus elaphus yarkandensis.SCIENTIFIC DATA,7(1).
MLA	Ba, Hengxing,et al."Chromosome-level genome assembly of Tarim red deer, Cervus elaphus yarkandensis".SCIENTIFIC DATA 7.1(2020).