干旱区生态环境知识资源中心(Arid): Unraveling the Chloroplast Genomes of Two Prosopis Species to Identify Its Genomic Information, Comparative Analyses and Phylogenetic Relationship

Arid

DOI	10.3390/ijms21093280
	Unraveling the Chloroplast Genomes of Two Prosopis Species to Identify Its Genomic Information, Comparative Analyses and Phylogenetic Relationship
	Asaf, Sajjad 1; Khan, Abdul Latif 1; Khan, Arif 2; Al-Harrasi, Ahmed 1
通讯作者	Khan, Abdul Latif ; Al-Harrasi, Ahmed
来源期刊	INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES
EISSN	1422-0067
出版年	2020
卷号	21 期号:9
英文摘要	Genus Prosopis (family Fabaceae) are shrubby trees, native to arid and semi-arid regions of Asia, Africa, and America and known for nitrogen fixation. Here, we have sequenced the complete chloroplast (cp) genomes of two Prosopis species (P. juliflora and P. cineraria) and compared them with previously sequenced P. glandulosa, Adenanthera microsperma, and Parkia javanica belonging to the same family. The complete genome sequences of Prosopis species and related species ranged from 159,389 bp (A. microsperma) to 163,677 bp (P. cineraria). The overall GC contents of the genomes were almost the similar (35.9-36.6%). The P. juliflora and P. cineraria genomes encoded 132 and 131 genes, respectively, whereas both the species comprised of 85 protein-coding genes higher than other compared species. About 140, 134, and 129 repeats were identified in P. juliflora, P. cineraria and P. glandulosa cp genomes, respectively. Similarly, the maximum number of simple sequence repeats were determined in P. juliflora (88), P. cineraria (84), and P. glandulosa (78). Moreover, complete cp genome comparison determined a high degree of sequence similarity among P. juliflora, P. cineraria, and P. glandulosa, however some divergence in the intergenic spacers of A. microsperma and Parkia javanica were observed. The phylogenetic analysis showed that P. juliflora is closer to P. cineraria than P. glandulosa.
英文关键词	plastid genome Fabaceae phylogenetic position comparative analysis inverted repeats
类型	Article
语种	英语
国家	Oman ; Norway
开放获取类型	Green Published, gold
收录类别	SCI-E
WOS记录号	WOS:000535581700251
WOS关键词	SEQUENCE VARIATION ; INVERTED REPEAT ; MATING SYSTEM ; GENE FLOW ; DNA ; LEGUMINOSAE ; EVOLUTION ; PLASTOME ; PATTERNS ; CONSERVATION
WOS类目	Biochemistry & Molecular Biology ; Chemistry, Multidisciplinary
WOS研究方向	Biochemistry & Molecular Biology ; Chemistry
资源类型	期刊论文
条目标识符	http://119.78.100.177/qdio/handle/2XILL650/319030
作者单位	1.Univ Nizwa, Nat & Med Sci Res Ctr, Nizwa 616, Oman; 2.Nord Univ, Fac Biosci & Aquaculture, Genom Grp, N-8049 Bodo, Norway
推荐引用方式 GB/T 7714	Asaf, Sajjad,Khan, Abdul Latif,Khan, Arif,et al. Unraveling the Chloroplast Genomes of Two Prosopis Species to Identify Its Genomic Information, Comparative Analyses and Phylogenetic Relationship[J],2020,21(9).
APA	Asaf, Sajjad,Khan, Abdul Latif,Khan, Arif,&Al-Harrasi, Ahmed.(2020).Unraveling the Chloroplast Genomes of Two Prosopis Species to Identify Its Genomic Information, Comparative Analyses and Phylogenetic Relationship.INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES,21(9).
MLA	Asaf, Sajjad,et al."Unraveling the Chloroplast Genomes of Two Prosopis Species to Identify Its Genomic Information, Comparative Analyses and Phylogenetic Relationship".INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES 21.9(2020).