干旱区生态环境知识资源中心(Arid): Potential dual expansion of domesticated donkeys revealed by worldwide analysis on mitochondrial sequences

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DOI	10.24272/j.issn.2095-8137.2020.007
	Potential dual expansion of domesticated donkeys revealed by worldwide analysis on mitochondrial sequences
	Ma, Xi-Yao 1; Ning, Tiao 2,3; Adeola, Adeniyi C.4,5; Li, Jie 1; Esmailizadeh, Ali 4,6; Lichoti, Jacqueline K.7; Agwanda, Bernard R.8; Isakova, Jainagul 9; Aldashev, Almaz A.9; Wu, Shi-Fang 4; Liu, He-Qun 4; Abdulloevich, Najmudinov Tojiddin 10; Afanasevna, Manilova Elena 10; Ibrohimovich, Khudoidodov Behruz 10; Adedokun, Rahamon Akinyele Moshood 11; Olaogun, Sunday Charles 11; Sanke, Oscar J.12; Mangbon, Godwin F.13; Chen, Xi14,15 ; Yang, Wei-Kang 14,15; Wang, Zhe 16,17; Peng, Min-Sheng 4,5,18; Ommeh, Sheila C.19; Li, Yan1 ; Zhang, Ya-Ping 1,4,18,20
通讯作者	Ommeh, Sheila C. ; Li, Yan ; Zhang, Ya-Ping
来源期刊	ZOOLOGICAL RESEARCH
ISSN	2095-8137
出版年	2020
卷号	41 期号:1 页码:51-60
英文摘要	Molecular studies on donkey mitochondrial sequences have clearly defined two distinct maternal lineages involved in domestication. However, domestication histories of these two lineages remain enigmatic. We therefore compared several population characteristics between these two lineages based on global sampling, which included 171 sequences obtained in this study (including Middle Asian, East Asian, and African samples) plus 536 published sequences (including European, Asian, and African samples). The two lineages were clearly separated from each other based on whole mitochondrial genomes and partial non-coding displacement loop (D-loop) sequences, respectively. The Clade I lineage experienced an increase in population size more than 8 000 years ago and shows a complex haplotype network. In contrast, the population size of the Clade II lineage has remained relatively constant, with a simpler haplotype network. Although the distribution of the two lineages was almost equal across the Eurasian mainland, they still presented discernible but complex geographic bias in most parts of Africa, which are known as their domestication sites. Donkeys from sub-Saharan Africa tended to descend from the Clade I lineage, whereas the Clade II lineage was dominant along the East and North coasts of Africa. Furthermore, the migration routes inferred from diversity decay suggested different expansion across China between the two lineages. Altogether, these differences indicated non-simultaneous domestication of the two lineages, which was possibly influenced by the response of pastoralists to the desertification of the Sahara and by the social expansion and trade of ancient humans in Northeast Africa, respectively.
英文关键词	Donkey lineage Domestication history Population Expansion
类型	Article
语种	英语
国家	Peoples R China ; Iran ; Kenya ; Kyrgyzstan ; Tajikistan ; Nigeria
开放获取类型	Green Published, gold
收录类别	SCI-E
WOS记录号	WOS:000516542500006
WOS关键词	GENETIC DIVERSITY ; EQUUS-ASINUS ; DNA ; POPULATIONS ; INSIGHTS
WOS类目	Zoology
WOS研究方向	Zoology
来源机构	中国科学院新疆生态与地理研究所
资源类型	期刊论文
条目标识符	http://119.78.100.177/qdio/handle/2XILL650/315755
作者单位	1.Yunnan Univ, Sch Life Sci, State Key Lab Conservat & Utilizat Bioresources Y, Kunming 650091, Yunnan, Peoples R China; 2.Kunming Univ, Agr Coll, Kunming 650214, Yunnan, Peoples R China; 3.Kunming Univ, Engn Res Ctr Urban Modern Agr Higher Educ Yunnan, Kunming 650214, Yunnan, Peoples R China; 4.Chinese Acad Sci, Kunming Inst Zool, State Key Lab Genet Resources & Evolut, Yunnan Lab Mol Biol Domest Anim,Germplasm Bank Wi, Kunming 650223, Yunnan, Peoples R China; 5.Chinese Acad Sci, Sino Africa Joint Res Ctr, Kunming 650223, Yunnan, Peoples R China; 6.Shahid Bahonar Univ Kerman, Fac Agr, Dept Anim Sci, Kerman 76169133, Iran; 7.Minist Agr Livestock & Fisheries, State Dept Livestock, Nairobi 00100, Kenya; 8.Natl Museums Kenya, Dept Zool, Nairobi 00100, Kenya; 9.Inst Mol Biol & Med, Bishkek 720040, Kyrgyzstan; 10.Acad Sci Republ Tajikistan, EN Pavlovsky Inst Zool & Parasitol, Dushanbe 734025, Tajikistan; 11.Univ Ibadan, Dept Vet Med, Ibadan 200284, Nigeria; 12.Taraba State Minist Agr & Nat Resources, Jalingo 660221, Nigeria; 13.Div Vet Off, Serti 663101, Nigeria; 14.Chinese Acad Sci, Res Ctr Ecol & Environm Cent Asia, Xinjiang 830011, Peoples R China; 15.Chinese Acad Sci, Xinjiang Inst Ecol & Geog, Key Lab Biogeog & Bioresource Arid Land, Urumqi 830011, Xinjiang, Peoples R China; 16.Hebei Med Univ, Dept Physiol, Shijiazhuang 050017, Hebei, Peoples R China; 17.Hebei Med Univ, Hebei Key Lab Anim Sci, Shijiazhuang 050017, Hebei, Peoples R China; 18.Univ Chinese Acad Sci, Kunming Coll Life Sci, Kunming 650204, Yunnan, Peoples R China; 19.Jomo Kenyatta Univ Agr & Technol, Inst Biotechnol Res, Anim Biotechnol Grp, Nairobi 00200, Kenya; 20.Chinese Acad Sci, Ctr Excellence Anim Evolut & Genet, Kunming 650223, Yunnan, Peoples R China
推荐引用方式 GB/T 7714	Ma, Xi-Yao,Ning, Tiao,Adeola, Adeniyi C.,et al. Potential dual expansion of domesticated donkeys revealed by worldwide analysis on mitochondrial sequences[J]. 中国科学院新疆生态与地理研究所,2020,41(1):51-60.
APA	Ma, Xi-Yao.,Ning, Tiao.,Adeola, Adeniyi C..,Li, Jie.,Esmailizadeh, Ali.,...&Zhang, Ya-Ping.(2020).Potential dual expansion of domesticated donkeys revealed by worldwide analysis on mitochondrial sequences.ZOOLOGICAL RESEARCH,41(1),51-60.
MLA	Ma, Xi-Yao,et al."Potential dual expansion of domesticated donkeys revealed by worldwide analysis on mitochondrial sequences".ZOOLOGICAL RESEARCH 41.1(2020):51-60.