干旱区生态环境知识资源中心(Arid): Complete chloroplast genome of Sophora alopecuroides (Papilionoideae): molecular structures, comparative genome analysis and phylogenetic analysis

Arid

DOI	10.1007/s12041-019-1173-3
	Complete chloroplast genome of Sophora alopecuroides (Papilionoideae): molecular structures, comparative genome analysis and phylogenetic analysis
	Zha, Xi; Wang, Xiaoyang; Li, Jinrong; Gao, Fei; Zhou, Yijun
通讯作者	Gao, Fei ; Zhou, Yijun
来源期刊	JOURNAL OF GENETICS
ISSN	0022-1333
EISSN	0973-7731
出版年	2020
卷号	99 期号:1
英文摘要	Sophora alopecuroides belongs to the genus Sophora of the family Papilionoideae. It is mainly distributed in the desert and semi-desert areas of northern China, and has high medicinal value and ecological function. Previous studies have reported the chemical composition and ecological functions of S. alopecuroides. However, only a few reports are available on the genomic information of S. alopecuroides, especially the chloroplast genome, which greatly limits the study of the evolutionary relationship between other species of Papilionoideae. Here, we report the complete chloroplast genome of S. alopecuroides. The size of the chloroplast genome is 155,207 bp, and the GC content is 36.44%. The S. alopecuroides chloroplast genome consists of 132 genes, including 83 protein-coding genes, 41 transfer RNA (tRNA) genes, and eight ribosomal RNA (rRNA) genes. Phylogenetic analysis revealed the taxonomic position of S. alopecuroides in Papilionoideae, and the genus Sophora and the genus Ammopiptanthus were highly related. Comparative genomics analysis revealed the gene rearrangement in the evolution of S. alopecuroides. The comparison between S. alopecuroides and the species of the Papilionoideae identified a novel 23 kb inversion between the trnC-GCA and trnF-GAA which occurred before the divergence of Sophora and Ammopiptanthus of Thermopsideae. This study provided an essential data for the understanding of phylogenetic status of S. alopecuroides.
英文关键词	chloroplast genome comparative genomics phylogenetic analysis IR region Sophora alopecuroides
类型	Article
语种	英语
国家	Peoples R China
收录类别	SCI-E
WOS记录号	WOS:000520077000001
WOS关键词	ANNOTATION ; APOPTOSIS ; DNA ; SEQUENCE ; PROGRAM ; RPL22
WOS类目	Genetics & Heredity
WOS研究方向	Genetics & Heredity
资源类型	期刊论文
条目标识符	http://119.78.100.177/qdio/handle/2XILL650/314964
作者单位	Minzu Univ China, Coll Life & Environm Sci, 27 Zhongguancun South St, Beijing 100081, Peoples R China
推荐引用方式 GB/T 7714	Zha, Xi,Wang, Xiaoyang,Li, Jinrong,et al. Complete chloroplast genome of Sophora alopecuroides (Papilionoideae): molecular structures, comparative genome analysis and phylogenetic analysis[J],2020,99(1).
APA	Zha, Xi,Wang, Xiaoyang,Li, Jinrong,Gao, Fei,&Zhou, Yijun.(2020).Complete chloroplast genome of Sophora alopecuroides (Papilionoideae): molecular structures, comparative genome analysis and phylogenetic analysis.JOURNAL OF GENETICS,99(1).
MLA	Zha, Xi,et al."Complete chloroplast genome of Sophora alopecuroides (Papilionoideae): molecular structures, comparative genome analysis and phylogenetic analysis".JOURNAL OF GENETICS 99.1(2020).