干旱区生态环境知识资源中心(Arid): Genome-wide identification and expression analysis of two component system genes in Cicer arietinum

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DOI	10.1016/j.ygeno.2019.08.006
	Genome-wide identification and expression analysis of two component system genes in Cicer arietinum
	Ahmad, Bilal 1; Azeem, Farrukh 1; Ali, Muhammad Amjad 2,3; Nawaz, Muhammad Amjad 4; Nadeem, Habibullah 1; Abbas, Amjad 2; Batool, Riffat 5; Atif, Rana Muhammad 6,7; Ijaz, Usman 1; Nieves-Cordones, Manuel 8; Chung, Gyuhwa 9
通讯作者	Azeem, Farrukh ; Chung, Gyuhwa
来源期刊	GENOMICS
ISSN	0888-7543
EISSN	1089-8646
出版年	2020
卷号	112 期号:2 页码:1371-1383
英文摘要	The two-component system (TCS) plays an important role in signal transduction pathways, cytokinin signaling and stress resistance of prokaryotes and eukaryotes. It is comprised of three types of proteins in plants; histidine kinases (HKs), histidine phosphotransfer proteins (HPs) and response regulators (RRs). Chickpea (Cicer arietinum L.) is one of the most important legume crops worldwide with special economic value in semi-arid tropics. Availability of complete genome sequence of chickpea presents a valuable resource for comparative analysis among angiosperms. In current study, Arabidopsis thaliana and Oryza saliva were used as reference plant species for comparative genomics analysis with C. arietinum. A genome-wide computational survey enabled us to identify putative members of TCS protein family including 18HKs, 26 RRs (7 type-A, 7 type-B, 2 type C and 10 pseudo) and 7 HPs (5 true and 2pseudo) genes in chickpea. The predicted TCS genes displayed family specific intron/exon organization and were randomly distributed across all the eight chromosomes. Comparative phylogenetic and evolutionary analysis suggested a variable conservation of TCS genes in relation to mono/dicot model plants and segmental duplication was the principal route of expansion for this family in chickpea. The promoter regions of TCS genes exhibited several abiotic stress-related cis-elements indicating their involvement in abiotic stress response. The expression analysis of TCS genes demonstrated stress (drought, heat, osmotic and salt) specific differential expression. Current study provides insight into TCS genes in C. arietinum, which will be helpful for further functional analysis of these genes in response to different abiotic stresses.
英文关键词	TCS genes Phylogenetics Evolutionary analysis Abiotic stress Chickpea
类型	Article
语种	英语
国家	Pakistan ; Russia ; Spain ; South Korea
开放获取类型	Bronze
收录类别	SCI-E
WOS记录号	WOS:000514071600037
WOS关键词	SIGNAL-TRANSDUCTION PATHWAYS ; ASCOCHYTA BLIGHT RESISTANCE ; RESPONSE REGULATORS ARR1 ; TO-ASP PHOSPHORELAY ; HISTIDINE KINASE ; ARABIDOPSIS-THALIANA ; CIS-ZEATIN ; CYTOKININ ; STRESS ; CHICKPEA
WOS类目	Biotechnology & Applied Microbiology ; Genetics & Heredity
WOS研究方向	Biotechnology & Applied Microbiology ; Genetics & Heredity
资源类型	期刊论文
条目标识符	http://119.78.100.177/qdio/handle/2XILL650/314574
作者单位	1.Govt Coll Univ, Dept Bioinformat & Biotechnol, Faisalabad 38000, Pakistan; 2.Univ Agr Faisalabad, Dept Plant Pathol, Faisalabad 38040, Pakistan; 3.Univ Agr Faisalabad, Ctr Agr Biochem & Biotechnol, Faisalabad 38040, Pakistan; 4.Far Eastern Fed Univ, Educ & Sci Ctr Nanotechnol, Vladivostok 690950, Russia; 5.GC Women Univ, Dept Bot, Faisalabad 38000, Pakistan; 6.Univ Agr Faisalabad, US Pakistan Ctr Adv Studies Agr & Food Secur, Faisalabad 38040, Pakistan; 7.Univ Agr Faisalabad, Dept Plant Breeding & Genet, Faisalabad 38040, Pakistan; 8.CEBAS CSIC, Dept Plant Nutr, Campus Univ Espinardo,Ed 25, Murcia 30100, Spain; 9.Chonnam Natl Univ, Dept Biotechnol, Yeosu 59626, South Korea
推荐引用方式 GB/T 7714	Ahmad, Bilal,Azeem, Farrukh,Ali, Muhammad Amjad,et al. Genome-wide identification and expression analysis of two component system genes in Cicer arietinum[J],2020,112(2):1371-1383.
APA	Ahmad, Bilal.,Azeem, Farrukh.,Ali, Muhammad Amjad.,Nawaz, Muhammad Amjad.,Nadeem, Habibullah.,...&Chung, Gyuhwa.(2020).Genome-wide identification and expression analysis of two component system genes in Cicer arietinum.GENOMICS,112(2),1371-1383.
MLA	Ahmad, Bilal,et al."Genome-wide identification and expression analysis of two component system genes in Cicer arietinum".GENOMICS 112.2(2020):1371-1383.