干旱区生态环境知识资源中心(Arid): Genome-Wide Association Studies and Genomic Selection in Pearl Millet: Advances and Prospects

Arid

DOI	10.3389/fgene.2019.01389
	Genome-Wide Association Studies and Genomic Selection in Pearl Millet: Advances and Prospects
	Srivastava, Rakesh K.1; Singh, Ram B.1; Pujarula, Vijaya Lakshmi 1; Bollam, Srikanth 1; Pusuluri, Madhu 1; Chellapilla, Tara Satyavathi 2; Yadav, Rattan S.3; Gupta, Rajeev 1
通讯作者	Srivastava, Rakesh K. ; Gupta, Rajeev
来源期刊	FRONTIERS IN GENETICS
EISSN	1664-8021
出版年	2020
卷号	10
英文摘要	Pearl millet is a climate-resilient, drought-tolerant crop capable of growing in marginal environments of arid and semi-arid regions globally. Pearl millet is a staple food for more than 90 million people living in poverty and can address the triple burden of malnutrition substantially. It remained a neglected crop until the turn of the 21st century, and much emphasis has been placed since then on the development of various genetic and genomic resources for whole-genome scan studies, such as the genome-wide association studies (GWAS) and genomic selection (GS). This was facilitated by the advent of sequencing-based genotyping, such as genotyping-by-sequencing (GBS), RAD-sequencing, and whole-genome re-sequencing (WGRS) in pearl millet. To carry out GWAS and GS, a world association mapping panel called the Pearl Millet inbred Germplasm Association Panel (PMiGAP) was developed at ICRISAT in partnership with Aberystwyth University. This panel consisted of germplasm lines, landraces, and breeding lines from 27 countries and was re-sequenced using the WGRS approach. It has a repository of circa 29 million genome-wide SNPs. PMiGAP has been used to map traits related to drought tolerance, grain Fe and Zn content, nitrogen use efficiency, components of endosperm starch, grain yield, etc. Genomic selection in pearl millet was jump-started recently by WGRS, RAD, and tGBS (tunable genotyping-by-sequencing) approaches for the PMiGAP and hybrid parental lines. Using multi-environment phenotyping of various training populations, initial attempts have been made to develop genomic selection models. This mini review discusses advances and prospects in GWAS and GS for pearl millet.
英文关键词	pearl millet genetic resources genomic resources genomic selection genome-wide association studies molecular markers
类型	Review
语种	英语
国家	India ; Wales
开放获取类型	gold, Green Accepted, Green Published
收录类别	SCI-E
WOS记录号	WOS:000525199400001
WOS关键词	QUANTITATIVE TRAIT LOCI ; SEQUENCE REPEAT MARKERS ; L. R. BR. ; LINKAGE DISEQUILIBRIUM ; PENNISETUM-GLAUCUM ; GENETIC-MAP ; CANDIDATE GENES ; ZINC CONTENT ; GRAIN IRON ; RESISTANCE
WOS类目	Genetics & Heredity
WOS研究方向	Genetics & Heredity
来源机构	International Crops Research Institute for the Semi-Arid Tropics
资源类型	期刊论文
条目标识符	http://119.78.100.177/qdio/handle/2XILL650/314544
作者单位	1.Int Crops Res Inst Semi Arid Trop, Hyderabad, India; 2.ICAR Res Complex, AICRP PM, Jodhpur, Rajasthan, India; 3.Aberystwyth Univ, IBERS, Gogerddan, Wales
推荐引用方式 GB/T 7714	Srivastava, Rakesh K.,Singh, Ram B.,Pujarula, Vijaya Lakshmi,et al. Genome-Wide Association Studies and Genomic Selection in Pearl Millet: Advances and Prospects[J]. International Crops Research Institute for the Semi-Arid Tropics,2020,10.
APA	Srivastava, Rakesh K..,Singh, Ram B..,Pujarula, Vijaya Lakshmi.,Bollam, Srikanth.,Pusuluri, Madhu.,...&Gupta, Rajeev.(2020).Genome-Wide Association Studies and Genomic Selection in Pearl Millet: Advances and Prospects.FRONTIERS IN GENETICS,10.
MLA	Srivastava, Rakesh K.,et al."Genome-Wide Association Studies and Genomic Selection in Pearl Millet: Advances and Prospects".FRONTIERS IN GENETICS 10(2020).