干旱区生态环境知识资源中心(Arid): Complete Genome Sequence of Paenibacillus sp. JZ16, a Plant Growth Promoting Root Endophytic Bacterium of the Desert Halophyte Zygophyllum Simplex

Arid

DOI	10.1007/s00284-020-01908-5
	Complete Genome Sequence of Paenibacillus sp. JZ16, a Plant Growth Promoting Root Endophytic Bacterium of the Desert Halophyte Zygophyllum Simplex
	Eida, Abdul Aziz 1; Bougouffa, Salim 2,3; Alam, Intikhab 2; Hirt, Heribert 1,4; Saad, Maged M.1
通讯作者	Saad, Maged M.
来源期刊	CURRENT MICROBIOLOGY
ISSN	0343-8651
EISSN	1432-0991
出版年	2020
卷号	77 期号:6 页码:1097-1103
英文摘要	Paenibacillus sp. JZ16 is a gram-positive, rod-shaped, motile root endophytic bacterium of the pioneer desert halophytic plant Zygophyllum simplex. JZ16 was previously shown to promote salinity stress tolerance in Arabidopsis thaliana and possesses a highly motile phenotype on nutrient agar. JZ16 genome sequencing using PacBio generated 82,236 reads with a mean insert read length of 11,432 bp and an estimated genome coverage of 127X, resulting in a chromosome of 7,421,843 bp with a GC content of 49.25% encoding 6710 proteins, 8 rRNA operons, 117 ncRNAs and 73 tRNAs. Whole-genome sequencing analysis revealed a potentially new species for JZ16. Functional analysis revealed the presence of a number of enzymes involved in the breakdown of plant-based polymers. JZ16 could be of potential use in agricultural applications for promoting biotic and abiotic stress tolerance and for biotechnological processes (e.g., as biocatalysts for biofuel production). The culture-dependent collection of bacterial endophytes from desert plants combined with genome sequence mining provides new opportunities for industrial applications.
类型	Article
语种	英语
国家	Saudi Arabia ; Austria
开放获取类型	Green Submitted
收录类别	SCI-E
WOS记录号	WOS:000515756200001
WOS关键词	THALIANA GENE-EXPRESSION ; IDENTIFICATION ; RESOURCE ; DATABASE ; CLUSTER
WOS类目	Microbiology
WOS研究方向	Microbiology
资源类型	期刊论文
条目标识符	http://119.78.100.177/qdio/handle/2XILL650/314299
作者单位	1.King Abdullah Univ Sci & Technol, Biol & Environm Sci & Engn Div, DARWIN21, Thuwal 239556900, Saudi Arabia; 2.King Abdullah Univ Sci & Technol, Computat Biosci Res Ctr, Thuwal 239556900, Saudi Arabia; 3.Abdullah Univ Sci & Technol, BioSci Core Lab, Thuwal 239556900, King, Saudi Arabia; 4.Univ Vienna, Max F Perutz Labs, Dr Bohrgasse 9, A-1030 Vienna, Austria
推荐引用方式 GB/T 7714	Eida, Abdul Aziz,Bougouffa, Salim,Alam, Intikhab,et al. Complete Genome Sequence of Paenibacillus sp. JZ16, a Plant Growth Promoting Root Endophytic Bacterium of the Desert Halophyte Zygophyllum Simplex[J],2020,77(6):1097-1103.
APA	Eida, Abdul Aziz,Bougouffa, Salim,Alam, Intikhab,Hirt, Heribert,&Saad, Maged M..(2020).Complete Genome Sequence of Paenibacillus sp. JZ16, a Plant Growth Promoting Root Endophytic Bacterium of the Desert Halophyte Zygophyllum Simplex.CURRENT MICROBIOLOGY,77(6),1097-1103.
MLA	Eida, Abdul Aziz,et al."Complete Genome Sequence of Paenibacillus sp. JZ16, a Plant Growth Promoting Root Endophytic Bacterium of the Desert Halophyte Zygophyllum Simplex".CURRENT MICROBIOLOGY 77.6(2020):1097-1103.