干旱区生态环境知识资源中心(Arid): Hymenobacter oligotrophus sp. nov., isolated from a contaminated agar plate

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DOI	10.1007/s10482-019-01279-3
	Hymenobacter oligotrophus sp. nov., isolated from a contaminated agar plate
	Geng, Yingchao; Zhang, Yumin; Tian, Jin; Liu, Jia; Qin, Kun; Huang, Yao; Wei, Ziyan; Peng, Fang
通讯作者	Peng, Fang
来源期刊	ANTONIE VAN LEEUWENHOEK INTERNATIONAL JOURNAL OF GENERAL AND MOLECULAR MICROBIOLOGY
ISSN	0003-6072
EISSN	1572-9699
出版年	2019
卷号	112 期号:10 页码:1533-1544
英文摘要	A taxonomic study of a Gram-stain negative, rod-shaped, motile, asporogenous, catalase- and oxidase-positive bacterium, sh-6(T), forming pink-red colonies, isolated from a contaminated R2A plate in the laboratory was performed. Its optimum growth temperature was determined to be 28 degrees C in the absence of NaCl on R2A plates. On the basis of 16S rRNA gene sequence analysis, strain sh-6(T) belongs to the genus Hymenobacter and is closely related to Hymenobacter deserti ZLB-3(T) (95.05%), Hymenobacter paludis KBP-30(T) (94.96%), Hymenobacter coalescens WW84(T) (94.04%), Hymenobacter gummosus ANT-18(T) (93.38%), Hymenobacter ocellatus Myx2105(T) (93.70%), Hymenobacter jeollabukensis 1-3-3-8(T) (93.48%) and Hymenobacter koreensis GYR3077(T) (93.21%). Comparison of the genome of strain sh-6(T) and that of H. gummosus ANT-18(T) gave digital DNA-DNA hybridization and Average Nucleotide Identity values of 20.6% and 78.4%, respectively. The respiratory isoprenoid quinone and polyamine component were identified as MK-7 and sym-homospermidine, respectively. The major cellular fatty acids identified as iso-C-15:0, summed feature 4 (iso-C-17:1 I/anteiso B), iso-C-16:0, iso-C-17:0 3-OH and iso-C-17:0. The major polar lipid of strain sh-6(T) determined to be phosphatidylethanolamine. The DNA G+C content was determined to be 60.5 mol%. On the basis of the evidence presented in this study, a novel species of the genus Hymenobacter, Hymenobacter oligotrophus sp. nov., is proposed, with the type strain sh-6(T) (= CCTCC AB 2016064(T) = KCTC 62345(T)).
英文关键词	Hymenobacter oligotrophus Novel species Phylogenetic analysis Taxonomy
类型	Article
语种	英语
国家	Peoples R China
收录类别	SCI-E
WOS记录号	WOS:000487039400009
WOS关键词	RADIATION-RESISTANT BACTERIUM ; EMENDED DESCRIPTION ; SEQUENCE ALIGNMENT ; GEN. NOV. ; PHYLOGENY ; PROPOSAL ; CLASSIFICATION ; IDENTIFICATION ; SANDSTONE ; DATABASE
WOS类目	Microbiology
WOS研究方向	Microbiology
EI主题词	2019-10-01
资源类型	期刊论文
条目标识符	http://119.78.100.177/qdio/handle/2XILL650/310112
作者单位	Wuhan Univ, Coll Life Sci, CCTCC, Wuhan 430072, Hubei, Peoples R China
推荐引用方式 GB/T 7714	Geng, Yingchao,Zhang, Yumin,Tian, Jin,et al. Hymenobacter oligotrophus sp. nov., isolated from a contaminated agar plate[J],2019,112(10):1533-1544.
APA	Geng, Yingchao.,Zhang, Yumin.,Tian, Jin.,Liu, Jia.,Qin, Kun.,...&Peng, Fang.(2019).Hymenobacter oligotrophus sp. nov., isolated from a contaminated agar plate.ANTONIE VAN LEEUWENHOEK INTERNATIONAL JOURNAL OF GENERAL AND MOLECULAR MICROBIOLOGY,112(10),1533-1544.
MLA	Geng, Yingchao,et al."Hymenobacter oligotrophus sp. nov., isolated from a contaminated agar plate".ANTONIE VAN LEEUWENHOEK INTERNATIONAL JOURNAL OF GENERAL AND MOLECULAR MICROBIOLOGY 112.10(2019):1533-1544.