Arid
DOI10.1117/12.2192787
Molecular studies of anaerobic strains from Antarctica and their taxonomic identification
Lyu, Zhe1; Pikuta, Elena V.2; Hagel, Jacob2; LaBrake, Genevieve R.2; Hoover, Richard B.2; Whitman, William B.1
通讯作者Lyu, Zhe
会议名称Conference on Instruments, Methods, and Missions for Astrobiology XVII
会议日期AUG 09-11, 2015
会议地点San Diego, CA
英文摘要

We present phylogenetic analyses for four anaerobic bacterial isolates from samples collected in the Schirmacher Oasis and Lake Untersee in Antarctica. Near-full length of 16S rRNA genes were amplified from the four strains and sequenced for identification of their close relatives and their phylogenetic relationships. Strain A7P-90m shared a low 16S rRNA sequence identity of around 85% with its closest relatives within the Bacteroides phylum. This low level of sequence similarity suggests that it may represent a novel family within this phylum. The 16S rRNA sequence identity between strain LZ-22 and its closest relatives Granulicoccus phenolivorans and Propioniferax innocua within the Propionibacteriaceae family were 91.9% and 93.2%, respectively. This low level of sequence similarity suggests that it may represent a novel genus within this family. Strains 9G and ISLP-3 were closely related to known species of the genera Halolactibacillus and Sanguibacter, respectively. However, the 16S rRNA sequence identities between strains 9G and ISLP-3 and their close relatives were too high to make reliable taxonomic inferences (i.e., 99.9% between 9G and H. miurensis, and 98.6% between ISLP-3 and S. suaresii). Because the recA gene delivers higher resolution for taxonomic inferences than the 16S rRNA gene, the primers for conserved recA gene were designed for PCR amplification and sequencing from Halolactibacillus and Sanguibacter type strains. Strain 9G shared a recA sequence identity of 99.6% with its closest relative H. miurensis, suggesting that it is a subspecies. The recA sequence identity shared between strain ISLP-3 and its six closest relatives ranged from 85.9 similar to 90.2%. This result is consistent with this strain representing a novel species within the genus Sanguibacter. Based on the molecular study presented here and the phenotypic properties presented elsewhere, we propose that strain LZ-22 is a representative of a novel genus and species, with proposed names Raineyella antarctica gen. nov., sp. nov. Strain ISLP-3 is a representative of a novel species, Sanguibacter gelidistatuaria sp. nov. Strain A7p-90m may represent a novel family within the order Bacteroidales. Chemotaxonomic characterizations of these strains are underway to gather more evidence for the proposed classifications.


英文关键词Anaerobe psychrophiles glacier PCR Bacterial Taxonomy Antarctica
来源出版物INSTRUMENTS, METHODS, AND MISSIONS FOR ASTROBIOLOGY XVII
ISSN0277-786X
EISSN1996-756X
出版年2015
卷号9606
EISBN978-1-62841-772-2
出版者SPIE-INT SOC OPTICAL ENGINEERING
类型Proceedings Paper
语种英语
国家USA
收录类别CPCI-S
WOS记录号WOS:000366510300023
WOS类目Instruments & Instrumentation ; Optics ; Physics, Applied
WOS研究方向Instruments & Instrumentation ; Optics ; Physics
资源类型会议论文
条目标识符http://119.78.100.177/qdio/handle/2XILL650/304114
作者单位1.Univ Georgia, Dept Microbiol, Athens, GA 30602 USA;
2.Athens State Univ, Dept Math Comp & Nat Sci, Athens, AL 35611 USA
推荐引用方式
GB/T 7714
Lyu, Zhe,Pikuta, Elena V.,Hagel, Jacob,et al. Molecular studies of anaerobic strains from Antarctica and their taxonomic identification[C]:SPIE-INT SOC OPTICAL ENGINEERING,2015.
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