干旱区生态环境知识资源中心(Arid): Transcriptome profiling reveals insights into the molecular mechanism of drought tolerance in sweetpotato

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DOI	10.1016/S2095-3119(18)61934-3
	Transcriptome profiling reveals insights into the molecular mechanism of drought tolerance in sweetpotato
	Zhu Hong; Zhou Yuan-yuan; Zhai Hong; He Shao-zhen; Zhao Ning; Liu Qing-chang
通讯作者	Liu Qing-chang
来源期刊	JOURNAL OF INTEGRATIVE AGRICULTURE
ISSN	2095-3119
出版年	2019
卷号	18 期号:1 页码:9-23
英文摘要	Sweetpotato, Ipomoea batatas (L.) Lam., is a globally important food crop and usually grown on arid-and semi-arid lands. Therefore, investigating the molecular mechanism of drought tolerance will provide important information for the improvement of drought tolerance in this crop. In this study, transcriptome analysis of the drought-tolerant sweetpotato line Xushu 55-2 was conducted on Illumina HiSeq 2500 platform. A total of 86.69 Gb clean data were generated and assembled into 2 671 693 contigs, 222 073 transcripts, and 73 636 unigenes. In total, 11 359 differentially expressed genes (DEGs) were identified after PEG6000 treatment, in which 7 666 were up-regulated and 3 693 were down-regulated. Of the 11 359 DEGs, 10 192 DEGs were annotated in at least one database, and the remaining 1 167 DEGs were unknown. Abscisic acid (ABA), ethylene (ETH), and jasmonic acid (JA) signalling pathways play a major role in drought tolerance of sweetpotato. Drought-inducible transcription factors were identified, some of which have been reported to be associated with drought tolerance and others are unknown in plants. In addition, 7 643 SSRs were detected. This study not only reveals insights into the molecular mechanism of drought tolerance in sweetpotato but also provides the candidate genes involved in drought tolerance of this crop.
英文关键词	sweetpotato Ipomoea batatas (L.) Lam. transcriptome drought tolerance molecular mechanism SSR markers
类型	Article
语种	英语
国家	Peoples R China
开放获取类型	hybrid
收录类别	SCI-E
WOS记录号	WOS:000454955200002
WOS关键词	STRESS TOLERANCE ; ABSCISIC-ACID ; OSMOTIC-STRESS ; SIGNAL-TRANSDUCTION ; GENE-EXPRESSION ; SALT TOLERANCE ; RNA-SEQ ; ARABIDOPSIS ; RESPONSES ; OVEREXPRESSION
WOS类目	Agriculture, Multidisciplinary
WOS研究方向	Agriculture
来源机构	中国农业大学
资源类型	期刊论文
条目标识符	http://119.78.100.177/qdio/handle/2XILL650/217203
作者单位	China Agr Univ, Beijing Key Lab Crop Genet Improvement, Lab Crop Heterosis & Utilizat,Minist Educ,Coll Ag, Key Lab Sweetpotato Biol & Biotechnol,Minist Agr, Beijing 100193, Peoples R China
推荐引用方式 GB/T 7714	Zhu Hong,Zhou Yuan-yuan,Zhai Hong,et al. Transcriptome profiling reveals insights into the molecular mechanism of drought tolerance in sweetpotato[J]. 中国农业大学,2019,18(1):9-23.
APA	Zhu Hong,Zhou Yuan-yuan,Zhai Hong,He Shao-zhen,Zhao Ning,&Liu Qing-chang.(2019).Transcriptome profiling reveals insights into the molecular mechanism of drought tolerance in sweetpotato.JOURNAL OF INTEGRATIVE AGRICULTURE,18(1),9-23.
MLA	Zhu Hong,et al."Transcriptome profiling reveals insights into the molecular mechanism of drought tolerance in sweetpotato".JOURNAL OF INTEGRATIVE AGRICULTURE 18.1(2019):9-23.