干旱区生态环境知识资源中心(Arid): Characterization of the complete chloroplast genome of Nitraria tangutorum, a desert shrub

Arid

DOI	10.1007/s12041-019-1135-9
	Characterization of the complete chloroplast genome of Nitraria tangutorum, a desert shrub
	Abla, Merhaba; Zha, Xi; Wang, Ying; Wang, Xiao Yang; Gao, Fei; Zhou, Yijun; Feng, Jinchao
通讯作者	Gao, Fei
来源期刊	JOURNAL OF GENETICS
ISSN	0022-1333
EISSN	0973-7731
出版年	2019
卷号	98 期号:3
英文摘要	The chloroplast genome sequence of Nitraria tangutorum, a desert shrub, was sequenced using high-throughput sequencing technology and analysed phylogenetically in the present study. The chloroplast genome is 159,414 bp in length, including a large single copy region of 87,924 bp and small single copy region of 18,318 bp, and a pair of inverted repeat regions of 26,586 bp. The chloroplast genome contains 110 unique genes, including 77 protein-coding genes, four ribosomal RNA genes, and 29 tRNA genes. Most of these genes are present as a single copy and in two or more copies 19 genes occurred. Seventeen genes have one intron, and clpP and ycf3 genes contain two introns. A total of 81 simple sequence repeats (SSRs) were identified, most of them were found to be mononucleotide repeats composed of A/T. In addition to SSRs, 66 repeats were identified, including 41 tandem repeats, 10 palindromic repeats, and 15 forward repeats. The phylogenetic analysis based on 54 protein-coding genes demonstrated a close relationship between N. tangutorum and other plant species in Sapindales. The complete chloroplast genome sequence of N. tangutorum will provide important data for further study of taxonomy and systematics of the genus Nitraria.
英文关键词	chloroplast genome simple sequence repeats analysis phylogenetic analysis Nitraria tangutorum
类型	Article
语种	英语
国家	Peoples R China
收录类别	SCI-E
WOS记录号	WOS:000484910600002
WOS关键词	SALINITY ; BOBR. ; ANTIOXIDANT ; METABOLISM
WOS类目	Genetics & Heredity
WOS研究方向	Genetics & Heredity
资源类型	期刊论文
条目标识符	http://119.78.100.177/qdio/handle/2XILL650/217025
作者单位	Minzu Univ China, Coll Life & Environm Sci, Beijing 100081, Peoples R China
推荐引用方式 GB/T 7714	Abla, Merhaba,Zha, Xi,Wang, Ying,et al. Characterization of the complete chloroplast genome of Nitraria tangutorum, a desert shrub[J],2019,98(3).
APA	Abla, Merhaba.,Zha, Xi.,Wang, Ying.,Wang, Xiao Yang.,Gao, Fei.,...&Feng, Jinchao.(2019).Characterization of the complete chloroplast genome of Nitraria tangutorum, a desert shrub.JOURNAL OF GENETICS,98(3).
MLA	Abla, Merhaba,et al."Characterization of the complete chloroplast genome of Nitraria tangutorum, a desert shrub".JOURNAL OF GENETICS 98.3(2019).