干旱区生态环境知识资源中心(Arid): Kribbella turkmenica sp. nov., isolated from the Karakum Desert

Arid

DOI	10.1099/ijsem.0.003538
	Kribbella turkmenica sp. nov., isolated from the Karakum Desert
	Saygin, Hayrettin 1; Ay, Hilal 2; Guven, Kiymet 3; Sahin, Nevzat 2
通讯作者	Sahin, Nevzat
来源期刊	INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY
ISSN	1466-5026
EISSN	1466-5034
出版年	2019
卷号	69 期号:8 页码:2533-2540
英文摘要	A novel actinobacterial strain, designated 16K104(T), was isolated from desert soil collected from the Karakum Desert and characterized using a polyphasic approach to clarify its taxonomic position. Strain 16K104(T) was found to have chemotaxonomic and morphological properties consistent with classification in the genus Kribbella. The strain shared the highest 16S rRNA gene sequence similarity with Kribbella albertanoniae BC640(T) (99.2 %), and formed a branch with Kribbella antibiotica YIM 31530(T) in the 16S rRNA gene phylogenetic tree. Multilocus sequence analysis (MLSA) using five housekeeping genes (gyrB, rpoB, relA, recA and atpD) for comparing the strain with all Kribbella type strains showed that the MLSA distances of strain 16K104(T) to the closely related type strains of the genus were much higher than the 0.04 threshold. The organism was found to contain LL-diaminopimelic acid as the diagnostic diamino acid in the cell-wall peptidoglycan. The whole-cell sugars were identified as ribose and glucose. The major polar lipids were diphosphatidylglycerol, phosphatidylcholine, phosphatidylglycerol and phosphatidylinositol. The predominant menaquinone was MK-9(H-4). The major fatty acids were iso-C-16:0, anteiso-C-15:0, iso-C-15:0 and iso-C-17:0. The results of digital DNA-DNA hybridization and average nucleotide identity analyses, in addition to MLSA phylogenetic distances, confirmed that the strain represents a novel species of the genus Kribbella, for which the name Kribbella turkmenica sp. nov. is proposed. The type strain is 16K104(T) (=JCM 32914(T)=KCTC 49224(T)).
英文关键词	Kribbella Phylogenomics Karakum Desert Polyphasic taxonomy
类型	Article
语种	英语
国家	Turkey
开放获取类型	Bronze
收录类别	SCI-E
WOS记录号	WOS:000478785800052
WOS关键词	RHIZOSPHERE SOIL ; DATABASE ; CLASSIFICATION ; STREPTOMYCES ; SEQUENCES ; PLANT ; TREE
WOS类目	Microbiology
WOS研究方向	Microbiology
资源类型	期刊论文
条目标识符	http://119.78.100.177/qdio/handle/2XILL650/216528
作者单位	1.Ondokuz Mayis Univ, Fac Sci & Arts, Dept Biol, TR-55139 Samsun, Turkey; 2.Ondokuz Mayis Univ, Fac Sci & Arts, Dept Mol Biol & Genet, TR-55139 Samsun, Turkey; 3.Eskisehir Tech Univ, Fac Sci, Dept Biol, TR-26555 Eskisehir, Turkey
推荐引用方式 GB/T 7714	Saygin, Hayrettin,Ay, Hilal,Guven, Kiymet,et al. Kribbella turkmenica sp. nov., isolated from the Karakum Desert[J],2019,69(8):2533-2540.
APA	Saygin, Hayrettin,Ay, Hilal,Guven, Kiymet,&Sahin, Nevzat.(2019).Kribbella turkmenica sp. nov., isolated from the Karakum Desert.INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY,69(8),2533-2540.
MLA	Saygin, Hayrettin,et al."Kribbella turkmenica sp. nov., isolated from the Karakum Desert".INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY 69.8(2019):2533-2540.