干旱区生态环境知识资源中心(Arid): Whole genomes and transcriptomes reveal adaptation and domestication of pistachio

Arid

DOI	10.1186/s13059-019-1686-3
	Whole genomes and transcriptomes reveal adaptation and domestication of pistachio
	Zeng, Lin 1,5; Tu, Xiao-Long 2; Dai, He 3; Han, Feng-Ming 3; Lu, Bing-She 7; Wang, Ming-Shan 1; Nanaei, Hojjat Asadollahpour 4; Tajabadipour, Ali 8; Mansouri, Mehdi 9; Li, Xiao-Long 3; Ji, Li-Li 2; Irwin, David M.6; Zhou, Hong 10; Liu, Min 3; Zheng, Hong-Kun 3; Esmailizadeh, Ali 4; Wu, Dong-Dong 1,11
通讯作者	Esmailizadeh, Ali ; Wu, Dong-Dong
来源期刊	GENOME BIOLOGY
ISSN	1474-760X
出版年	2019
卷号	20
英文摘要	BackgroundPistachio (Pistacia vera), one of the most important commercial nut crops worldwide, is highly adaptable to abiotic stresses and is tolerant to drought and salt stresses.ResultsHere, we provide a draft de novo genome of pistachio as well as large-scale genome resequencing. Comparative genomic analyses reveal stress adaptation of pistachio is likely attributable to the expanded cytochrome P450 and chitinase gene families. Particularly, a comparative transcriptomic analysis shows that the jasmonic acid (JA) biosynthetic pathway plays an important role in salt tolerance in pistachio. Moreover, we resequence 93 cultivars and 14 wild P. vera genomes and 35 closely related wild Pistacia genomes, to provide insights into population structure, genetic diversity, and domestication. We find that frequent genetic admixture occurred among the different wild Pistacia species. Comparative population genomic analyses reveal that pistachio was domesticated about 8000years ago and suggest that key genes for domestication related to tree and seed size experienced artificial selection.ConclusionsOur study provides insight into genetic underpinning of local adaptation and domestication of pistachio. The Pistacia genome sequences should facilitate future studies to understand the genetic basis of agronomically and environmentally related traits of desert crops.
英文关键词	Pistacia vera Crop domestication Artificial selection Genome
类型	Article
语种	英语
国家	Peoples R China ; Iran ; Canada
开放获取类型	Green Published, gold
收录类别	SCI-E
WOS记录号	WOS:000465145200002
WOS关键词	GENETIC DIVERSITY ; PLANT CHITINASES ; SALT STRESS ; ARABIDOPSIS ; IDENTIFICATION ; ACID ; CLASSIFICATION ; ARCHITECTURE ; ANNOTATION ; EXPRESSION
WOS类目	Biotechnology & Applied Microbiology ; Genetics & Heredity
WOS研究方向	Biotechnology & Applied Microbiology ; Genetics & Heredity
资源类型	期刊论文
条目标识符	http://119.78.100.177/qdio/handle/2XILL650/215881
作者单位	1.Chinese Acad Sci, Kunming Inst Zool, State Key Lab Genet Resources & Evolut, Kunming 650223, Yunnan, Peoples R China; 2.Allwegene Technol Inc, Beijing 102209, Peoples R China; 3.Biomarker Technol Corp, Beijing, Peoples R China; 4.Shahid Bahonar Univ Kerman, Fac Agr, Dept Anim Sci, PB 76169-133, Kerman, Iran; 5.Univ Chinese Acad Sci, Kunming Coll Life Sci, Kunming 650204, Yunnan, Peoples R China; 6.Univ Toronto, Banting & Best Diabet Ctr, Dept Lab Med & Pathobiol, Toronto, ON M5S 1A8, Canada; 7.Agr Univ Hebei, Coll Landscape Architecture & Tourism, Baoding 071000, Peoples R China; 8.AREEO, Hort Sci Res Inst, Pistachio Res Ctr, Rafsanjan, Iran; 9.Shahid Bahonar Univ Kerman, Fac Agr, Dept Agr Biotechnol, Kerman, Iran; 10.Chinese Acad Forestry Sci, Beijing, Peoples R China; 11.Chinese Acad Sci, Ctr Excellence Anim Evolut & Genet, Kunming 650223, Yunnan, Peoples R China
推荐引用方式 GB/T 7714	Zeng, Lin,Tu, Xiao-Long,Dai, He,et al. Whole genomes and transcriptomes reveal adaptation and domestication of pistachio[J],2019,20.
APA	Zeng, Lin.,Tu, Xiao-Long.,Dai, He.,Han, Feng-Ming.,Lu, Bing-She.,...&Wu, Dong-Dong.(2019).Whole genomes and transcriptomes reveal adaptation and domestication of pistachio.GENOME BIOLOGY,20.
MLA	Zeng, Lin,et al."Whole genomes and transcriptomes reveal adaptation and domestication of pistachio".GENOME BIOLOGY 20(2019).