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Quantifying the water balance within areas with sparse vegetation requires frequent measurement of transpiration in water-limited, arid, desert ecosystems. Field experiments were conducted in Shapotou, northwestern China, to examine the feasibility of up-scaling the transpiration of C-3 and C-4 xerophytic shrubs (Reaumuria soongorica and Salsola passerina, respectively) from the leaf to the canopy level throughout the growing season in 2015. The large weighing lysimeter method and LI-6400XT portable photosynthesis system were used to make relatively long-term measurements of transpiration. The results indicated that meteorological factors coupled with stomatal conductance affected the transpiration rate of the two shrubs at the leaf level, and that the vapor pressure deficit other than net radiation and the air temperature affected the transpiration rate of S. passerina at the canopy level. Precipitation and vegetation characteristics determined the transpiration amount of the C-3 and C-4 xerophytic shrubs. The leaf gas exchange measurements were arithmetically scaled up to the canopy level based on the leaf area. The validity of the extrapolation was evaluated by comparing the upscale values of transpiration with the calculated values obtained from lysimeter measurement. The up-scaling approach accurately (+/- 0.005 mm h(-1), RMSE = 35%) obtained canopy transpiration from the leaf measurements. Our study suggests that the up-scaling method based on leaf area can be adopted to determine the canopy transpiration of C-3 and C-4 xerophytic shrubs in arid desert environments.