Arid
DOI10.1007/s00468-018-1697-9
Genetic diversity studies in endangered desert teak [Tecomella undulata (Sm) Seem] using arbitrary (RAPD), semi-arbitrary (ISSR) and sequence based (nuclear rDNA) markers
Chhajer, Sidhika1; Jukanti, Aravind Kumar1,2; Bhatt, R. K.1; Kalia, Rajwant K.1
通讯作者Kalia, Rajwant K.
来源期刊TREES-STRUCTURE AND FUNCTION
ISSN0931-1890
EISSN1432-2285
出版年2018
卷号32期号:4页码:1083-1101
英文摘要

Substantial genetic diversity exists in the natural populations of desert teak which needs to be conserved in-situ as well as ex-situ to ensure sustainable utilization and survival of this endangered tree.


Tecomella undulata (Sm) Seem (family bignoniaceae) is a medicinally important agroforestry tree yielding quality timber commercially known as desert teak. This slow growing tree found in hot arid regions of western Rajasthan is used to treat various ailments and disorders. This monotypic genus with three colour morphotypes is also used for phytoremediation of soils, biosorptive removal of inorganic salts, synthesis of silver nanoparticles, rehabilitation of lignite mine backfills and as bio-fertilizer. This multifaceted tree is heading towards extinction due to over exploitation, unscientific management and negligible plantation efforts. No initiatives have been undertaken to conserve, domesticate or genetically improve this pharmacologically important timber tree. An attempt was made to analyze the genetic variability existing in western Rajasthan, the natural hub of this species, using RAPD, ISSR and rDNA markers for the first time. The RAPD markers (69.05%) detected polymorphism more efficiently compared to ISSR (61.76%) among the 119 samples belonging to 22 populations. Likewise, average number of amplicons, polymorphic amplicons and polymorphism information content (PIC) were more for RAPD (11.25, 7.95 and 0.52, respectively) than for ISSR (10.4, 6.45 and 0.40) markers. The percent variability within and between populations varied among ISSR (64 and 36%, respectively) and RAPD (71 and 29%) markers. A positive correlation coefficient (r) of 0.402 was observed between RAPD and ISSR markers. The UPGMA dendrogram separated the samples into 13 (RAPD) and 11(ISSR) clusters with one out group each. At places, associations based on corolla colour, climatic, and geographical proximity were also recorded at subgroup levels. The single distinct amplicon (similar to 650 bp) of 5.8S gene region showed a uniform nucleotide length of 163 bp for the conserved 5.8S rDNA region while length variations were for observed in ITS-1 (223 to 226) and ITS-2 (238 to 242) regions. The phylogram delineated the 23 samples into 5 major clusters. Sufficient genetic variability recorded vide this study was conserved (8.5 kg winged seed from 317 trees) under long-term storage facility to ensure availability for futuristic breeding and improvement programs.


英文关键词Arid region Endangered tree Genetic diversity RAPD markers rDNA markers Rohida ISSR markers
类型Article
语种英语
国家India
收录类别SCI-E
WOS记录号WOS:000438795300012
WOS关键词CODON TARGETED SCOT ; MOLECULAR MARKERS ; L. ; POPULATIONS ; CONSERVATION ; VARIABILITY ; REGIONS ; IRAP
WOS类目Forestry
WOS研究方向Forestry
来源机构ICAR Central Arid Zone Research Institute
资源类型期刊论文
条目标识符http://119.78.100.177/qdio/handle/2XILL650/213506
作者单位1.ICAR Cent Arid Zone Res Inst, Div Plant Improvement & Pest Management, Jodhpur 342003, Rajasthan, India;
2.ICAR Indian Inst Rice Res, Hyderabad 500030, Telangana, India
推荐引用方式
GB/T 7714
Chhajer, Sidhika,Jukanti, Aravind Kumar,Bhatt, R. K.,et al. Genetic diversity studies in endangered desert teak [Tecomella undulata (Sm) Seem] using arbitrary (RAPD), semi-arbitrary (ISSR) and sequence based (nuclear rDNA) markers[J]. ICAR Central Arid Zone Research Institute,2018,32(4):1083-1101.
APA Chhajer, Sidhika,Jukanti, Aravind Kumar,Bhatt, R. K.,&Kalia, Rajwant K..(2018).Genetic diversity studies in endangered desert teak [Tecomella undulata (Sm) Seem] using arbitrary (RAPD), semi-arbitrary (ISSR) and sequence based (nuclear rDNA) markers.TREES-STRUCTURE AND FUNCTION,32(4),1083-1101.
MLA Chhajer, Sidhika,et al."Genetic diversity studies in endangered desert teak [Tecomella undulata (Sm) Seem] using arbitrary (RAPD), semi-arbitrary (ISSR) and sequence based (nuclear rDNA) markers".TREES-STRUCTURE AND FUNCTION 32.4(2018):1083-1101.
条目包含的文件
条目无相关文件。
个性服务
推荐该条目
保存到收藏夹
导出为Endnote文件
谷歌学术
谷歌学术中相似的文章
[Chhajer, Sidhika]的文章
[Jukanti, Aravind Kumar]的文章
[Bhatt, R. K.]的文章
百度学术
百度学术中相似的文章
[Chhajer, Sidhika]的文章
[Jukanti, Aravind Kumar]的文章
[Bhatt, R. K.]的文章
必应学术
必应学术中相似的文章
[Chhajer, Sidhika]的文章
[Jukanti, Aravind Kumar]的文章
[Bhatt, R. K.]的文章
相关权益政策
暂无数据
收藏/分享

除非特别说明,本系统中所有内容都受版权保护,并保留所有权利。