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Pyramid Lake, Nevada, remains one of the last strongholds for lacustrine-strain Lahontan Cutthroat Trout Oncorhynchus clarkii henshawi (LCT) following historical declines throughout their native range. Historically the apex predator in this aquatic ecosystem, LCT in Pyramid Lake are now entirely dependent on hatchery programs and are potentially threatened by the introduction of a nonnative piscivore. The purpose of this study was to identify strong food web interactions and potential trophic limitations to the LCT population. Our specific objectives were to estimate seasonal foraging patterns, trophic position (TP), trophic niche space, diet composition, and seasonal depth distributions of LCT relative to prey fish. Additionally, we evaluated the potential for competition between LCT and nonnative, piscivorous Sacramento Perch Archoplites interruptus by examining diet overlap and trophic niche space. Our results indicate that LCT are apex predators, with TP (large [>400mm TL] LCT: TP [mean +/- 1.96SE]= 4.30 +/- 0.04) and diet composition indicating high rates of piscivory (average annual rate of piscivory=77.1% for large LCT) throughout the year. Small (200-400mm TL) LCT exhibited weak dietary overlap (Schoener’s index=0.55) and large LCT exhibited strong overlap (Schoener’s index=0.72) with Sacramento Perch. These trends were present despite seasonal changes in distribution and catch of Tui Chub Siphateles bicolor, the primary prey of LCT. Analysis of isotopic niche space also indicated strong overlap between the trophic niche of large LCT (89%) and that of Sacramento Perch; however, overall catch rates of Sacramento Perch were low. Despite the presence of a potential nonnative competitor, LCT demonstrate high rates of piscivory and are not negatively influenced by Sacramento Perch. Overall, these results demonstrate how trophic niche ecology can be used to evaluate key food web interactions in anthropogenically altered ecosystems.