Arid
DOI10.1016/j.syapm.2018.03.005
Geodermatophilus chilensis sp nov., from soil of the Yungay core-region of the Atacama Desert, Chile
Franco Castro, Jean1,2; Nouioui, Imen1; Sangal, Vartul3; Trujillo, Martha E.4; Montero-Calasanz, Maria del Carmen1; Rahmani, Tara1; Bull, Alan T.5; Asenjo, Juan A.2; Andrews, Barbara A.2; Goodfellow, Michael1
通讯作者Goodfellow, Michael
来源期刊SYSTEMATIC AND APPLIED MICROBIOLOGY
ISSN0723-2020
出版年2018
卷号41期号:5页码:427-436
英文摘要

A polyphasic study was undertaken to establish the taxonomic status of three representative Geodermatophilus strains isolated from an extreme hyper-arid Atacama Desert soil. The strains, isolates B12(T), B20 and B25, were found to have chemotaxonomic and morphological properties characteristic of the genus Geodermatophilus. The isolates shared a broad range of chemotaxonomic, cultural and physiological features, formed a well-supported branch in the Geodermatophilus 16S rRNA gene tree in which they were most closely associated with the type strain of Geodermatophilus obscurus. They were distinguished from the latter by BOX-PCR fingerprint patterns and by chemotaxonomic and other phenotypic properties. Average nucleotide identity, average amino acid identity and digital DNA-DNA hybridization values between the whole genome sequences of isolate B12(T) and G. obscurus DSM 43160(T) were 89.28%, 87.27% and 37.4%, respectively, metrics consistent with its classification as a separate species. On the basis of these data, it is proposed that the isolates be assigned to the genus Geodermatophilus as Geodermatophilus chilensis sp. nov. with isolate B12(T) (CECT 9483(T) =NCIMB 15089(T)) as the type strain. Analysis of the whole genome sequence of G. chilensis B12(T) with 5341 open reading frames and a genome size of 5.5 Mb highlighted genes and gene clusters that encode for properties relevant to its adaptation to extreme environmental conditions prevalent in extreme hyper-arid Atacama Desert soils. (C) 2018 Published by Elsevier GmbH.


英文关键词Geodermatophilus chilensis Polyphasic taxonomy Atacama Desert Whole-genome sequences
类型Article
语种英语
国家England ; Chile ; Spain
收录类别SCI-E
WOS记录号WOS:000444471100002
WOS关键词DNA-DNA HYBRIDIZATION ; GLYCINE BETAINE ; GENOME SEQUENCE ; SAHARAN DESERT ; SPECIES DEFINITION ; BACILLUS-SUBTILIS ; GENE CLUSTERS ; IDENTIFICATION ; SAND ; ACTINOBACTERIUM
WOS类目Biotechnology & Applied Microbiology ; Microbiology
WOS研究方向Biotechnology & Applied Microbiology ; Microbiology
资源类型期刊论文
条目标识符http://119.78.100.177/qdio/handle/2XILL650/213401
作者单位1.Newcastle Univ, Sch Nat & Environm Sci, Ridley Bldg, Newcastle Upon Tyne NE1 7RU, Tyne & Wear, England;
2.Univ Chile, Ctr Biotechnol & Bioengn CeBiB, Dept Chem Engn & Biotechnol, Beauchef 851, Santiago, Chile;
3.Northumbria Univ, Fac Hlth & Life Sci, Newcastle Upon Tyne NE1 8ST, Tyne & Wear, England;
4.Univ Salamanca, Dept Microbiol & Genet, Campus Miguel Unamuno, Salamanca 37007, Spain;
5.Univ Kent, Sch Biosci, Canterbury CT2 7NJ, Kent, England
推荐引用方式
GB/T 7714
Franco Castro, Jean,Nouioui, Imen,Sangal, Vartul,et al. Geodermatophilus chilensis sp nov., from soil of the Yungay core-region of the Atacama Desert, Chile[J],2018,41(5):427-436.
APA Franco Castro, Jean.,Nouioui, Imen.,Sangal, Vartul.,Trujillo, Martha E..,Montero-Calasanz, Maria del Carmen.,...&Goodfellow, Michael.(2018).Geodermatophilus chilensis sp nov., from soil of the Yungay core-region of the Atacama Desert, Chile.SYSTEMATIC AND APPLIED MICROBIOLOGY,41(5),427-436.
MLA Franco Castro, Jean,et al."Geodermatophilus chilensis sp nov., from soil of the Yungay core-region of the Atacama Desert, Chile".SYSTEMATIC AND APPLIED MICROBIOLOGY 41.5(2018):427-436.
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