Arid
DOI10.1186/s40793-018-0315-1
High quality draft genome sequences of Mycoplasma agassizii strains PS6(T) and 723 isolated from Gopherus tortoises with upper respiratory tract disease
Alvarez-Ponce, David1; Weitzman, Chava L.1; Tillett, Richard L.2; Sandmeier, Franziska C.3; Tracy, C. Richard1
通讯作者Alvarez-Ponce, David
来源期刊STANDARDS IN GENOMIC SCIENCES
ISSN1944-3277
出版年2018
卷号13
英文摘要

Mycoplasma agassizii is one of the known causative agents of upper respiratory tract disease (URTD) in Mojave desert tortoises (Gopherus agassizii) and in gopher tortoises (Gopherus polyphemus). We sequenced the genomes of M. agassizii strains PS6(T) (ATCC 700616) and 723 (ATCC 700617) isolated from the upper respiratory tract of a Mojave desert tortoise and a gopher tortoise, respectively, both with signs of URTD. The PS6(T) genome assembly was organized in eight scaffolds, had a total length of 1,274,972 bp, a G + C content of 28.43%, and contained 979 protein-coding genes, 13 pseudogenes and 35 RNA genes. The 723 genome assembly was organized in 40 scaffolds, had a total length of 1,211,209 bp, a G + C content of 28.34%, and contained 955 protein-coding genes, seven pseudogenes, and 35 RNA genes. Both genomes exhibit a very similar organization and very similar numbers of genes in each functional category. Pairs of orthologous genes encode proteins that are 93.57% identical on average. Homology searches identified a putative cytadhesin. These genomes will enable studies that will help understand the molecular bases of pathogenicity of this and other Mycoplasma species.


英文关键词Mycoplasma agassizii Desert tortoise Gopher tortoise Gopherus Upper respiratory tract disease (URTD) PS6(T) ATCC 700616 723 ATCC 700617
类型Article
语种英语
国家USA
收录类别SCI-E
WOS记录号WOS:000431107700001
WOS关键词RIBOSOMAL-RNA GENE ; DESERT TORTOISE ; PHYLOGENETIC ANALYSIS ; INFORMATION ; CLASSIFICATION ; ANNOTATION ; POLYPHEMUS ; ORGANISMS ; MORTALITY ; ALIGNMENT
WOS类目Genetics & Heredity ; Microbiology
WOS研究方向Genetics & Heredity ; Microbiology
来源机构Colorado State University
资源类型期刊论文
条目标识符http://119.78.100.177/qdio/handle/2XILL650/213300
作者单位1.Univ Nevada, Biol Dept, Reno, NV 89557 USA;
2.Univ Nevada, Nevada Ctr Bioinformat, Reno, NV 89557 USA;
3.Colorado State Univ, Biol Dept, Pueblo, CO USA
推荐引用方式
GB/T 7714
Alvarez-Ponce, David,Weitzman, Chava L.,Tillett, Richard L.,et al. High quality draft genome sequences of Mycoplasma agassizii strains PS6(T) and 723 isolated from Gopherus tortoises with upper respiratory tract disease[J]. Colorado State University,2018,13.
APA Alvarez-Ponce, David,Weitzman, Chava L.,Tillett, Richard L.,Sandmeier, Franziska C.,&Tracy, C. Richard.(2018).High quality draft genome sequences of Mycoplasma agassizii strains PS6(T) and 723 isolated from Gopherus tortoises with upper respiratory tract disease.STANDARDS IN GENOMIC SCIENCES,13.
MLA Alvarez-Ponce, David,et al."High quality draft genome sequences of Mycoplasma agassizii strains PS6(T) and 723 isolated from Gopherus tortoises with upper respiratory tract disease".STANDARDS IN GENOMIC SCIENCES 13(2018).
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