Knowledge Resource Center for Ecological Environment in Arid Area
DOI | 10.17957/IJAB/15.0531 |
Whole Genomic EST-SSR Development Based on High-Throughput Transcript Sequencing in Proso Millet (Panicum miliaceum) | |
Jiang, Yanmiao1,2; Li, Haiquan1,2; Zhang, Jianan1,2; Xiang, Jinying1,2; Cheng, Ruhong1,2; Liu, Guoqing1,2 | |
通讯作者 | Cheng, Ruhong ; Liu, Guoqing |
来源期刊 | INTERNATIONAL JOURNAL OF AGRICULTURE AND BIOLOGY
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ISSN | 1560-8530 |
EISSN | 1814-9596 |
出版年 | 2018 |
卷号 | 20期号:3页码:617-620 |
英文摘要 | Proso millet (Panicum miliaceum L.) with short growing period, is highly suited to drought and semi-arid climate, and thus possesses great potential for research. In this study, 8139 Expressed Sequence Tags-simple sequence repeat (EST-SSR) makers were developed from the transcript sequencing of Proso millet cultivar Yanshu 5. Tri-type was the major type, accounting for 83.65% of all the found SSR types, followed by di-type accounting for 11.1%. CCG/CGG was the most ample repeat-motif types in Proso millet. Twenty four primer pairs of these markers were synthesized for empirical validation and 21 primers obtained targeted fragments by PCR amplification. Three of the 21 markers were polymorphic among 20 Chinese Proso millet landraces which suggested that these EST-SSR markers can be used for genetic studies. Markers developed in this work can be used for agronomic trait location, linkage map construction and molecular breeding in Proso millet in the future. (c) 2018 Friends Science Publishers. |
英文关键词 | Proso millet High-throughput sequencing SSR development Characterization |
类型 | Article |
语种 | 英语 |
国家 | Peoples R China |
收录类别 | SCI-E |
WOS记录号 | WOS:000427440200019 |
WOS关键词 | POLYMORPHIC MICROSATELLITE MARKERS ; GENETIC DIVERSITY ; QUALITY ; PROTEIN |
WOS类目 | Agriculture, Multidisciplinary ; Biology |
WOS研究方向 | Agriculture ; Life Sciences & Biomedicine - Other Topics |
资源类型 | 期刊论文 |
条目标识符 | http://119.78.100.177/qdio/handle/2XILL650/210120 |
作者单位 | 1.Hebei Acad Agr & Forestry Sci, Inst Millet Crops, Shijiazhuang 050035, Hebei, Peoples R China; 2.Key Lab Minor Crops Hebei, Shijiazhuang 050035, Hebei, Peoples R China |
推荐引用方式 GB/T 7714 | Jiang, Yanmiao,Li, Haiquan,Zhang, Jianan,et al. Whole Genomic EST-SSR Development Based on High-Throughput Transcript Sequencing in Proso Millet (Panicum miliaceum)[J],2018,20(3):617-620. |
APA | Jiang, Yanmiao,Li, Haiquan,Zhang, Jianan,Xiang, Jinying,Cheng, Ruhong,&Liu, Guoqing.(2018).Whole Genomic EST-SSR Development Based on High-Throughput Transcript Sequencing in Proso Millet (Panicum miliaceum).INTERNATIONAL JOURNAL OF AGRICULTURE AND BIOLOGY,20(3),617-620. |
MLA | Jiang, Yanmiao,et al."Whole Genomic EST-SSR Development Based on High-Throughput Transcript Sequencing in Proso Millet (Panicum miliaceum)".INTERNATIONAL JOURNAL OF AGRICULTURE AND BIOLOGY 20.3(2018):617-620. |
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