Arid
DOI10.17957/IJAB/15.0531
Whole Genomic EST-SSR Development Based on High-Throughput Transcript Sequencing in Proso Millet (Panicum miliaceum)
Jiang, Yanmiao1,2; Li, Haiquan1,2; Zhang, Jianan1,2; Xiang, Jinying1,2; Cheng, Ruhong1,2; Liu, Guoqing1,2
通讯作者Cheng, Ruhong ; Liu, Guoqing
来源期刊INTERNATIONAL JOURNAL OF AGRICULTURE AND BIOLOGY
ISSN1560-8530
EISSN1814-9596
出版年2018
卷号20期号:3页码:617-620
英文摘要

Proso millet (Panicum miliaceum L.) with short growing period, is highly suited to drought and semi-arid climate, and thus possesses great potential for research. In this study, 8139 Expressed Sequence Tags-simple sequence repeat (EST-SSR) makers were developed from the transcript sequencing of Proso millet cultivar Yanshu 5. Tri-type was the major type, accounting for 83.65% of all the found SSR types, followed by di-type accounting for 11.1%. CCG/CGG was the most ample repeat-motif types in Proso millet. Twenty four primer pairs of these markers were synthesized for empirical validation and 21 primers obtained targeted fragments by PCR amplification. Three of the 21 markers were polymorphic among 20 Chinese Proso millet landraces which suggested that these EST-SSR markers can be used for genetic studies. Markers developed in this work can be used for agronomic trait location, linkage map construction and molecular breeding in Proso millet in the future. (c) 2018 Friends Science Publishers.


英文关键词Proso millet High-throughput sequencing SSR development Characterization
类型Article
语种英语
国家Peoples R China
收录类别SCI-E
WOS记录号WOS:000427440200019
WOS关键词POLYMORPHIC MICROSATELLITE MARKERS ; GENETIC DIVERSITY ; QUALITY ; PROTEIN
WOS类目Agriculture, Multidisciplinary ; Biology
WOS研究方向Agriculture ; Life Sciences & Biomedicine - Other Topics
资源类型期刊论文
条目标识符http://119.78.100.177/qdio/handle/2XILL650/210120
作者单位1.Hebei Acad Agr & Forestry Sci, Inst Millet Crops, Shijiazhuang 050035, Hebei, Peoples R China;
2.Key Lab Minor Crops Hebei, Shijiazhuang 050035, Hebei, Peoples R China
推荐引用方式
GB/T 7714
Jiang, Yanmiao,Li, Haiquan,Zhang, Jianan,et al. Whole Genomic EST-SSR Development Based on High-Throughput Transcript Sequencing in Proso Millet (Panicum miliaceum)[J],2018,20(3):617-620.
APA Jiang, Yanmiao,Li, Haiquan,Zhang, Jianan,Xiang, Jinying,Cheng, Ruhong,&Liu, Guoqing.(2018).Whole Genomic EST-SSR Development Based on High-Throughput Transcript Sequencing in Proso Millet (Panicum miliaceum).INTERNATIONAL JOURNAL OF AGRICULTURE AND BIOLOGY,20(3),617-620.
MLA Jiang, Yanmiao,et al."Whole Genomic EST-SSR Development Based on High-Throughput Transcript Sequencing in Proso Millet (Panicum miliaceum)".INTERNATIONAL JOURNAL OF AGRICULTURE AND BIOLOGY 20.3(2018):617-620.
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