Arid
DOI10.1007/s00439-018-1928-6
Novel candidate genes and variants underlying autosomal recessive neurodevelopmental disorders with intellectual disability
Santos-Cortez, Regie Lyn P.1,2; Khan, Valeed3; Khan, Falak Sher3; Mughal, Zaib-un-Nisa3; Chakchouk, Imen1; Lee, Kwanghyuk1; Rasheed, Memoona3; Hamza, Rifat3; Acharya, Anushree1; Ullah, Ehsan3; Saqib, Muhammad Arif Nadeem3,4; Abbe, Izoduwa1; Ali, Ghazanfar5; Hassan, Muhammad Jawad6; Khan, Saadullah7; Azeem, Zahid8; Ullah, Irfan3; Bamshad, Michael J.9,10; Nickerson, Deborah A.9; Schrauwen, Isabelle1; Ahmad, Wasim3; Ansar, Muhammad3; Leal, Suzanne M.1
通讯作者Leal, Suzanne M.
来源期刊HUMAN GENETICS
ISSN0340-6717
EISSN1432-1203
出版年2018
卷号137期号:9页码:735-752
英文摘要

Identification of Mendelian genes for neurodevelopmental disorders using exome sequencing to study autosomal recessive (AR) consanguineous pedigrees has been highly successful. To identify causal variants for syndromic and non-syndromic intellectual disability (ID), exome sequencing was performed using DNA samples from 22 consanguineous Pakistani families with ARID, of which 21 have additional phenotypes including microcephaly. To aid in variant identification, homozygosity mapping and linkage analysis were performed. DNA samples from affected family member(s) from every pedigree underwent exome sequencing. Identified rare damaging exome variants were tested for co-segregation with ID using Sanger sequencing. For seven ARID families, variants were identified in genes not previously associated with ID, including: EI24, FXR1 and TET3 for which knockout mouse models have brain defects; and CACNG7 and TRAPPC10 where cell studies suggest roles in important neural pathways. For two families, the novel ARID genes CARNMT1 and GARNL3 lie within previously reported ID microdeletion regions. We also observed homozygous variants in two ID candidate genes, GRAMD1B and TBRG1, for which each has been previously reported in a single family. An additional 14 families have homozygous variants in established ID genes, of which 11 variants are novel. All ARID genes have increased expression in specific structures of the developing and adult human brain and 91% of the genes are differentially expressed in utero or during early childhood. The identification of novel ARID candidate genes and variants adds to the knowledge base that is required to further understand human brain function and development.


类型Article
语种英语
国家USA ; Pakistan
收录类别SCI-E
WOS记录号WOS:000444822200007
WOS关键词DEVELOPMENTAL DELAY ; MENTAL-RETARDATION ; PAKISTANI FAMILIES ; SEQUENCING REVEALS ; MISSENSE MUTATION ; BINDING PROTEIN ; DONNAI-BARROW ; HUMAN BRAIN ; EXPRESSION ; TUSC3
WOS类目Genetics & Heredity
WOS研究方向Genetics & Heredity
资源类型期刊论文
条目标识符http://119.78.100.177/qdio/handle/2XILL650/209852
作者单位1.Baylor Coll Med, Dept Mol & Human Genet, Ctr Stat Genet, 1 Baylor Plaza 700D, Houston, TX 77030 USA;
2.Univ Colorado, Sch Med, Dept Otolaryngol, 12700 E 19th Ave, Aurora, CO 80045 USA;
3.Quaid I Azam Univ, Dept Biochem, Fac Biol Sci, Islamabad 45320, Pakistan;
4.Pakistan Hlth Res Council, Shahrah E Jamhuriat G-5-2, Islamabad, Pakistan;
5.Univ Azad Jammu & Kashmir, Dept Biotechnol, Muzaffarabad, Pakistan;
6.Natl Univ Sci & Technol, Atta Ur Rahman Sch Appl Biosci, Dept Healthcare Biotechnol, Islamabad, Pakistan;
7.Kohat Univ Sci & Technol, Dept Biotechnol & Genet Engn, Kohat, Kpk, Pakistan;
8.Azad Jammu & Kashmir Med Coll, Dept Biochem, Muzaffarabad, Pakistan;
9.Univ Washington, Dept Genome Sci, Foege Bldg S-250,3720 15th Ave, Seattle, WA 98195 USA;
10.Univ Washington, Dept Pediat, 1959 NE Pacific St, Seattle, WA 98195 USA
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Santos-Cortez, Regie Lyn P.,Khan, Valeed,Khan, Falak Sher,et al. Novel candidate genes and variants underlying autosomal recessive neurodevelopmental disorders with intellectual disability[J],2018,137(9):735-752.
APA Santos-Cortez, Regie Lyn P..,Khan, Valeed.,Khan, Falak Sher.,Mughal, Zaib-un-Nisa.,Chakchouk, Imen.,...&Leal, Suzanne M..(2018).Novel candidate genes and variants underlying autosomal recessive neurodevelopmental disorders with intellectual disability.HUMAN GENETICS,137(9),735-752.
MLA Santos-Cortez, Regie Lyn P.,et al."Novel candidate genes and variants underlying autosomal recessive neurodevelopmental disorders with intellectual disability".HUMAN GENETICS 137.9(2018):735-752.
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