Knowledge Resource Center for Ecological Environment in Arid Area
DOI | 10.1016/j.gene.2018.03.004 |
Selection and validation of reference genes for quantitative real-time PCR in Artemisia sphaerocephala based on transcriptome sequence data | |
Hu, Xiaowei; Zhang, Lijing; Nan, Shuzhen; Miao, Xiumei; Yang, Pengfang; Duan, Guoqin; Fu, Hua | |
通讯作者 | Zhang, Lijing ; Fu, Hua |
来源期刊 | GENE
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ISSN | 0378-1119 |
EISSN | 1879-0038 |
出版年 | 2018 |
卷号 | 657页码:39-49 |
英文摘要 | Artemisia sphaerocephala, a dicotyledonous perennial semi-shrub belonging to the Artemisia genus of the Compositae family, is widely distributed in northwestern China. This shrub is one of the most important pioneer plants which is capable of protecting rangelands from wind erosion. It therefore plays a vital role in maintaining desert ecosystem stability. In addition, to its use as a forage grass, it has excellent prospective applications as a source of plant oil and as a plant-based fuel. The use of internal genes is the basis for accurately assessing Real time quantitative PCR. In this study, based on transcriptome data of A. sphaerocephala, we analyzed 21 candidate internal genes to determine the optimal internal genes in this shrub. The stabilities of candidate genes were evaluated in 16 samples of A. sphaerocephala. Finally, UBC9 and TIP41-like were determined as the optimal reference genes in A. sphaerocephala by Delta Ct and three various programs. There were GeNorm, NormFinder and BestKeeper. |
英文关键词 | Artemisia sphaerocephala Transcriptome Reference gene Stability |
类型 | Article |
语种 | 英语 |
国家 | Peoples R China |
收录类别 | SCI-E |
WOS记录号 | WOS:000430901100005 |
WOS关键词 | POLYMERASE-CHAIN-REACTION ; EXPRESSION ANALYSIS ; HOUSEKEEPING GENES ; INTERNAL CONTROL ; RT-PCR ; IDENTIFICATION ; NORMALIZATION ; REVEALS |
WOS类目 | Genetics & Heredity |
WOS研究方向 | Genetics & Heredity |
来源机构 | 兰州大学 |
资源类型 | 期刊论文 |
条目标识符 | http://119.78.100.177/qdio/handle/2XILL650/209518 |
作者单位 | Lanzhou Univ, Coll Pastoral Agr Sci & Technol, Natl Demonstrat Ctr Expt Grassland Sci Educ, State Key Lab Grassland Agroecosyst, Lanzhou, Gansu, Peoples R China |
推荐引用方式 GB/T 7714 | Hu, Xiaowei,Zhang, Lijing,Nan, Shuzhen,et al. Selection and validation of reference genes for quantitative real-time PCR in Artemisia sphaerocephala based on transcriptome sequence data[J]. 兰州大学,2018,657:39-49. |
APA | Hu, Xiaowei.,Zhang, Lijing.,Nan, Shuzhen.,Miao, Xiumei.,Yang, Pengfang.,...&Fu, Hua.(2018).Selection and validation of reference genes for quantitative real-time PCR in Artemisia sphaerocephala based on transcriptome sequence data.GENE,657,39-49. |
MLA | Hu, Xiaowei,et al."Selection and validation of reference genes for quantitative real-time PCR in Artemisia sphaerocephala based on transcriptome sequence data".GENE 657(2018):39-49. |
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