Arid
DOI10.1016/j.gene.2018.03.004
Selection and validation of reference genes for quantitative real-time PCR in Artemisia sphaerocephala based on transcriptome sequence data
Hu, Xiaowei; Zhang, Lijing; Nan, Shuzhen; Miao, Xiumei; Yang, Pengfang; Duan, Guoqin; Fu, Hua
通讯作者Zhang, Lijing ; Fu, Hua
来源期刊GENE
ISSN0378-1119
EISSN1879-0038
出版年2018
卷号657页码:39-49
英文摘要

Artemisia sphaerocephala, a dicotyledonous perennial semi-shrub belonging to the Artemisia genus of the Compositae family, is widely distributed in northwestern China. This shrub is one of the most important pioneer plants which is capable of protecting rangelands from wind erosion. It therefore plays a vital role in maintaining desert ecosystem stability. In addition, to its use as a forage grass, it has excellent prospective applications as a source of plant oil and as a plant-based fuel. The use of internal genes is the basis for accurately assessing Real time quantitative PCR. In this study, based on transcriptome data of A. sphaerocephala, we analyzed 21 candidate internal genes to determine the optimal internal genes in this shrub. The stabilities of candidate genes were evaluated in 16 samples of A. sphaerocephala. Finally, UBC9 and TIP41-like were determined as the optimal reference genes in A. sphaerocephala by Delta Ct and three various programs. There were GeNorm, NormFinder and BestKeeper.


英文关键词Artemisia sphaerocephala Transcriptome Reference gene Stability
类型Article
语种英语
国家Peoples R China
收录类别SCI-E
WOS记录号WOS:000430901100005
WOS关键词POLYMERASE-CHAIN-REACTION ; EXPRESSION ANALYSIS ; HOUSEKEEPING GENES ; INTERNAL CONTROL ; RT-PCR ; IDENTIFICATION ; NORMALIZATION ; REVEALS
WOS类目Genetics & Heredity
WOS研究方向Genetics & Heredity
来源机构兰州大学
资源类型期刊论文
条目标识符http://119.78.100.177/qdio/handle/2XILL650/209518
作者单位Lanzhou Univ, Coll Pastoral Agr Sci & Technol, Natl Demonstrat Ctr Expt Grassland Sci Educ, State Key Lab Grassland Agroecosyst, Lanzhou, Gansu, Peoples R China
推荐引用方式
GB/T 7714
Hu, Xiaowei,Zhang, Lijing,Nan, Shuzhen,et al. Selection and validation of reference genes for quantitative real-time PCR in Artemisia sphaerocephala based on transcriptome sequence data[J]. 兰州大学,2018,657:39-49.
APA Hu, Xiaowei.,Zhang, Lijing.,Nan, Shuzhen.,Miao, Xiumei.,Yang, Pengfang.,...&Fu, Hua.(2018).Selection and validation of reference genes for quantitative real-time PCR in Artemisia sphaerocephala based on transcriptome sequence data.GENE,657,39-49.
MLA Hu, Xiaowei,et al."Selection and validation of reference genes for quantitative real-time PCR in Artemisia sphaerocephala based on transcriptome sequence data".GENE 657(2018):39-49.
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