Arid
DOI10.1016/j.actatropica.2018.09.004
Machine learning approaches in GIS-based ecological modeling of the sand fly Phlebotomus papatasi, a vector of zoonotic cutaneous leishmaniasis in Golestan province, Iran
Mollalo, Abolfazl1; Sadeghian, Ali2; Israel, Glenn D.3; Rashidi, Parisa4; Sofizadeh, Aioub5; Glass, Gregory E.1,6
通讯作者Mollalo, Abolfazl
来源期刊ACTA TROPICA
ISSN0001-706X
EISSN1873-6254
出版年2018
卷号188页码:187-194
英文摘要

The distribution and abundance of Phlebotomus papatasi, the primary vector of zoonotic cutaneous leishmaniasis in most semi-/arid countries, is a major public health challenge. This study compares several approaches to model the spatial distribution of the species in an endemic region of the disease in Golestan province, northeast of Iran. The intent is to assist decision makers for targeted interventions. We developed a geo-database of the collected Phlebotominae sand flies from different parts of the study region. Sticky paper traps coated with castor oil were used to collect sand flies. In 44 out of 142 sampling sites, Ph. papatasi was present. We also gathered and prepared data on related environmental factors including topography, weather variables, distance to main rivers and remotely sensed data such as normalized difference vegetation cover and land surface temperature (LST) in a GIS framework. Applicability of three classifiers: (vanilla) logistic regression, random forest and support vector machine (SVM) were compared for predicting presence/absence of the vector. Predictive performances were compared using an independent dataset to generate area under the ROC curve (AUC) and Kappa statistics. All three models successfully predicted the presence/absence of the vector, however, the SVM classifier (Accuracy = 0.906, AUC = 0.974, Kappa = 0.876) outperformed the other classifiers on predicting accuracy. Moreover, this classifier was the most sensitive (85%), and the most specific (93%) model. Sensitivity analysis of the most accurate model (i.e. SVM) revealed that slope, nighttime LST in October and mean temperature of the wettest quarter were among the most important predictors. The findings suggest that machine learning techniques, especially the SVM classifier, when coupled with GIS and remote sensing data can be a useful and cost-effective way for identifying habitat suitability of the species.


英文关键词Accuracy assessment Ecological modeling GIS Support vector machine Zoonotic cutaneous leishmaniasis
类型Article
语种英语
国家USA ; Iran
收录类别SCI-E
WOS记录号WOS:000448093000023
WOS关键词RANDOM FOREST ; DIPTERA PSYCHODIDAE ; FLIES DIPTERA ; CLASSIFICATION ; STATISTICS ; SELECTION ; PREDICT ; COVER ; AREA
WOS类目Parasitology ; Tropical Medicine
WOS研究方向Parasitology ; Tropical Medicine
资源类型期刊论文
条目标识符http://119.78.100.177/qdio/handle/2XILL650/207199
作者单位1.Univ Florida, Dept Geog, 3141 Turlington Hall,POB 117315, Gainesville, FL 32611 USA;
2.Univ Florida, Dept Elect & Comp Engn, Gainesville, FL 32611 USA;
3.Univ Florida, Program Dev & Evaluat Ctr, Dept Agr Educ & Commun, Gainesville, FL 32611 USA;
4.Univ Florida, Dept Biomed Engn, Gainesville, FL 32611 USA;
5.Golestan Univ Med Sci, Infect Dis Res Ctr, Gorgan, Iran;
6.Univ Florida, Emerging Pathogens Inst, Gainesville, FL 32611 USA
推荐引用方式
GB/T 7714
Mollalo, Abolfazl,Sadeghian, Ali,Israel, Glenn D.,et al. Machine learning approaches in GIS-based ecological modeling of the sand fly Phlebotomus papatasi, a vector of zoonotic cutaneous leishmaniasis in Golestan province, Iran[J],2018,188:187-194.
APA Mollalo, Abolfazl,Sadeghian, Ali,Israel, Glenn D.,Rashidi, Parisa,Sofizadeh, Aioub,&Glass, Gregory E..(2018).Machine learning approaches in GIS-based ecological modeling of the sand fly Phlebotomus papatasi, a vector of zoonotic cutaneous leishmaniasis in Golestan province, Iran.ACTA TROPICA,188,187-194.
MLA Mollalo, Abolfazl,et al."Machine learning approaches in GIS-based ecological modeling of the sand fly Phlebotomus papatasi, a vector of zoonotic cutaneous leishmaniasis in Golestan province, Iran".ACTA TROPICA 188(2018):187-194.
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