Knowledge Resource Center for Ecological Environment in Arid Area
DOI | 10.1186/s40793-017-0226-6 |
Complete genome sequence of Jiangella gansuensis strain YIM 002(T) (DSM 44835(T)), the type species of the genus Jiangella and source of new antibiotic compounds | |
Jiao, Jian-Yu1,2; Carro, Lorena3; Liu, Lan1,2; Gao, Xiao-Yang4; Zhang, Xiao-Tong1,2; Hozzein, Wael N.5,13; Lapidus, Alla6,7; Huntemann, Marcel8; Reddy, T. B. K.8; Varghese, Neha8; Hadjithomas, Michalis8; Ivanova, Natalia N.8; Goeker, Markus9; Pillay, Manoj10; Eisen, Jonathan A.11; Woyke, Tanja; Klenk, Hans-Peter3,9; Kyrpides, Nikos C.12; Li, Wen-Jun1,2,14 | |
通讯作者 | Klenk, Hans-Peter ; Li, Wen-Jun |
来源期刊 | STANDARDS IN GENOMIC SCIENCES
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ISSN | 1944-3277 |
出版年 | 2017 |
卷号 | 12 |
英文摘要 | Jiangella gansuensis strain YIM 002(T) is the type strain of the type species of the genus Jiangella, which is at the present time composed of five species, and was isolated from desert soil sample in Gansu Province (China). The five strains of this genus are clustered in a monophyletic group when closer actinobacterial genera are used to infer a 16S rRNA gene sequence phylogeny. The study of this genome is part of the Genomic Encyclopedia of Bacteria and Archaea project, and here we describe the complete genome sequence and annotation of this taxon. The genome of J. gansuensis strain YIM 002(T) contains a single scaffold of size 5,585,780 bp, which involves 149 pseudogenes, 4905 protein-coding genes and 50 RNA genes, including 2520 hypothetical proteins and 4 rRNA genes. From the investigation of genome sizes of Jiangella species, J. gansuensis shows a smaller size, which indicates this strain might have discarded too much genetic information to adapt to desert environment. Seven new compounds from this bacterium have recently been described; however, its potential should be higher, as secondary metabolite gene cluster analysis predicted 60 gene clusters, including the potential to produce the pristinamycin. |
英文关键词 | Jiangella gansuensis Jiangellales Desert Genome Taxonomic comments GEBA |
类型 | Article |
语种 | 英语 |
国家 | Peoples R China ; England ; Saudi Arabia ; USA ; Russia ; Germany ; Egypt |
收录类别 | SCI-E |
WOS记录号 | WOS:000394389000001 |
WOS关键词 | SP-NOV. ; SP. NOV. ; ACTINOMYCETE ; PROPOSAL ; BACTERIAL ; SYSTEM ; TOOL ; ACTINOBACTERIUM ; CLASSIFICATION ; RECOGNITION |
WOS类目 | Genetics & Heredity ; Microbiology |
WOS研究方向 | Genetics & Heredity ; Microbiology |
来源机构 | 中国科学院新疆生态与地理研究所 ; King Saud University ; University of California, Davis |
资源类型 | 期刊论文 |
条目标识符 | http://119.78.100.177/qdio/handle/2XILL650/202546 |
作者单位 | 1.Sun Yat Sen Univ, Coll Life Sci, State Key Lab Biocontrol, Guangzhou, Guangdong, Peoples R China; 2.Sun Yat Sen Univ, Coll Life Sci, Guangdong Prov Key Lab Plant Resources, Guangzhou, Guangdong, Peoples R China; 3.Newcastle Univ, Sch Biol, Newcastle Upon Tyne, Tyne & Wear, England; 4.Chinese Acad Sci, Xishuangbanna Trop Bot Garden, Key Lab Trop Plant Resources & Sustainable Use, Kunming, Yunnan Province, Peoples R China; 5.King Saud Univ, Coll Sci, BRC, Riyadh, Saudi Arabia; 6.Lawrence Berkeley Natl Lab, Berkeley, CA 94720 USA; 7.St Petersburg State Univ, Ctr Algorithm Biotechnol, St Petersburg, Russia; 8.DOE Joint Genome Inst, Walnut Creek, CA USA; 9.Leibniz Inst DSMZ German Collect Microorganisms &, Braunschweig, Germany; 10.Lawrence Berkeley Natl Lab, Biol Data Management & Technol Ctr, Berkeley, CA USA; 11.Univ Calif Davis, Davis, CA 95616 USA; 12.King Abdulaziz Univ, Dept Biol Sci, Fac Sci, Jeddah, Saudi Arabia; 13.Beni Suef Univ, Dept Bot & Microbiol, Fac Sci, Bani Suwayf, Egypt; 14.Chinese Acad Sci, Xinjiang Inst Ecol & Geog, Key Lab Biogeog & Bioresource Arid Land, Urumqi, Peoples R China |
推荐引用方式 GB/T 7714 | Jiao, Jian-Yu,Carro, Lorena,Liu, Lan,et al. Complete genome sequence of Jiangella gansuensis strain YIM 002(T) (DSM 44835(T)), the type species of the genus Jiangella and source of new antibiotic compounds[J]. 中国科学院新疆生态与地理研究所, King Saud University, University of California, Davis,2017,12. |
APA | Jiao, Jian-Yu.,Carro, Lorena.,Liu, Lan.,Gao, Xiao-Yang.,Zhang, Xiao-Tong.,...&Li, Wen-Jun.(2017).Complete genome sequence of Jiangella gansuensis strain YIM 002(T) (DSM 44835(T)), the type species of the genus Jiangella and source of new antibiotic compounds.STANDARDS IN GENOMIC SCIENCES,12. |
MLA | Jiao, Jian-Yu,et al."Complete genome sequence of Jiangella gansuensis strain YIM 002(T) (DSM 44835(T)), the type species of the genus Jiangella and source of new antibiotic compounds".STANDARDS IN GENOMIC SCIENCES 12(2017). |
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