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DOI10.1016/j.jmgm.2017.07.025
Ligand-binding characterization of simulated beta-adrenergic-like octopamine receptor in Schistocerca gregaria via progressive structure simulation
Lu, Hui-Meng; Lu, Xiao-Li; Zhai, Jia-Hui; Zhou, Ren-Bin; Qin, Yan-Li; Li, Jing-Di; Zhang, Chen-Yan; Shi, Jian-Yu
通讯作者Lu, Hui-Meng ; Shi, Jian-Yu
来源期刊JOURNAL OF MOLECULAR GRAPHICS & MODELLING
ISSN1093-3263
EISSN1873-4243
出版年2017
卷号77页码:25-32
英文摘要

It is important to design insecticides having both low drug resistance and less undesirable toxicity for desert locust control. Specific GPCRs of Schistocerca gregaria, especially beta-adrenergic-like octopamine receptor (SgOct beta R), can be considered as its potential effective insecticide targets. However, either the unavailability of SgOct beta R’s structure or the inadequate capability of its sequence lead the development of insecticide for Schistocerca gregaria meets its plateau. To relax this difficulty, this paper develops a promising progressive structure simulation from SgOct beta R’s sequence, to its predicted structure of SgOct beta R in vacuum, to its conformation as well as its complex with endogenous ligand octopamine in a solvent-membrane system. The combined approach of multiple sequence alignment, static structural characterization, and dynamic process of conformational change during binding octopamine reveal three important aspects. The first one is the characterization of SgOct beta R’s active pocket, including the attending secondary structure elements, its hydrophobic residues and nonpolar surface. The second one is the interaction with octopamine, especially the involved hydrogen bonds and an aromatic stacking of pi-pi interactions. The third one is the potential binding sites, including six highly conserved residues and one highly variable residue for locust insecticide design. This work is definitely helpful for the further structure-based drug design for efficient and eco-friendly insecticides, as well as site-directed mutagenesis biochemical research of SgOct beta R. (C) 2017 Published by Elsevier Inc.


英文关键词beta-Adrenergic-like octopamine receptor Schistocerca gregaria Homology modeling Molecular dynamics simulation Ligand-receptor interaction
类型Article
语种英语
国家Peoples R China
收录类别SCI-E
WOS记录号WOS:000417659200004
WOS关键词2ND EXTRACELLULAR LOOP ; MOLECULAR-DYNAMICS ; DRUG-DESIGN ; RHIPICEPHALUS-MICROPLUS ; DEVELOPMENTAL-STAGES ; BOMBYX-MORI ; RESISTANCE ; INSECT ; GENE ; IDENTIFICATION
WOS类目Biochemical Research Methods ; Biochemistry & Molecular Biology ; Computer Science, Interdisciplinary Applications ; Crystallography ; Mathematical & Computational Biology
WOS研究方向Biochemistry & Molecular Biology ; Computer Science ; Crystallography ; Mathematical & Computational Biology
资源类型期刊论文
条目标识符http://119.78.100.177/qdio/handle/2XILL650/200678
作者单位Northwestern Polytech Univ, Key Lab Space Biosci & Biotechnol, Sch Life Sci, Inst Special Environm Biophys, Xian 710072, Shaanxi, Peoples R China
推荐引用方式
GB/T 7714
Lu, Hui-Meng,Lu, Xiao-Li,Zhai, Jia-Hui,et al. Ligand-binding characterization of simulated beta-adrenergic-like octopamine receptor in Schistocerca gregaria via progressive structure simulation[J],2017,77:25-32.
APA Lu, Hui-Meng.,Lu, Xiao-Li.,Zhai, Jia-Hui.,Zhou, Ren-Bin.,Qin, Yan-Li.,...&Shi, Jian-Yu.(2017).Ligand-binding characterization of simulated beta-adrenergic-like octopamine receptor in Schistocerca gregaria via progressive structure simulation.JOURNAL OF MOLECULAR GRAPHICS & MODELLING,77,25-32.
MLA Lu, Hui-Meng,et al."Ligand-binding characterization of simulated beta-adrenergic-like octopamine receptor in Schistocerca gregaria via progressive structure simulation".JOURNAL OF MOLECULAR GRAPHICS & MODELLING 77(2017):25-32.
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